Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F19
(1251 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 478 e-136
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 68 3e-12
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 44 3e-05
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 44 3e-05
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 44 4e-05
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 42 2e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 39 0.002
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 38 0.002
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 37 0.005
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 30 0.58
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 1.0
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 2.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 5.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 7.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 7.2
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 7.2
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 26 9.5
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 478 bits (1178), Expect = e-136
Identities = 223/308 (72%), Positives = 267/308 (86%)
Frame = +1
Query: 43 PCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH 222
PC C LVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH
Sbjct: 96 PC--EICNSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH 153
Query: 223 LAAIEIMKLKHILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIE 402
LAAIEIM+LKHI+ILQNK+DL++E A+E ++ I+KF++GTVAE +PI+PISAQLKYNI+
Sbjct: 154 LAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTVAENSPIVPISAQLKYNID 213
Query: 403 VLCEYITKKIPVPLRDFTSPPRMIVIRSFDVNKPGCEVDDLRGGVAGGSILQGVLTVGME 582
+ EYI KKIP+P+RDFT+ PR+IVIRSFDVNKPG EVDDL+GGVAGGSIL GVL + E
Sbjct: 214 AILEYIVKKIPIPVRDFTTAPRLIVIRSFDVNKPGAEVDDLKGGVAGGSILTGVLRLNDE 273
Query: 583 IEVRPGLVSKDADGKLTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIEPTLCRADRL 762
IE+RPG+V+KD DG++ C+PIFSRI+SLFAE N+L+ AVPGGLIGVGT ++PTLCRADRL
Sbjct: 274 IEIRPGIVTKDDDGRIRCQPIFSRIISLFAEHNDLKIAVPGGLIGVGTTVDPTLCRADRL 333
Query: 763 VGQVLGAVGCLPGIFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIGSLST 942
VGQVLG+ G LP ++ +LE++Y+LL+RLLGV++ GDK KVQKL KNEVL+VNIGS ST
Sbjct: 334 VGQVLGSKGNLPEVYTELEINYFLLRRLLGVKS-GDKNTTKVQKLAKNEVLMVNIGSTST 392
Query: 943 GGRXIATK 966
GGR + K
Sbjct: 393 GGRVMMVK 400
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 67.7 bits (158), Expect = 3e-12
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Frame = +1
Query: 85 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILI 264
RH + VDCPGH + M+ GAA MD A+++++ + PQT EHL + +K I++
Sbjct: 116 RHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDG-QMPQTREHLLLARQVGVKQIVV 174
Query: 265 LQNKIDLVKEGQAK--EQHEQIVKFVQGTVAEGAPIIPISAQLKY---NIEVLCEYITKK 429
NK+D+V+ + E + + G + PI+ SA E+ ITK
Sbjct: 175 YINKVDMVEPDMIELVEMEMRELLSEYGFDGDNTPIVSGSALCALEGREPEIGLNSITKL 234
Query: 430 IPVPLRDFTSPPRMIVIRSFDVNKPGCEVDDLRGGVAGGSILQGVLTVGMEIEV 591
+ T P R + + + RG V G + +G L G EIE+
Sbjct: 235 MEAVDSYITLPERKTDVPFLMAIEDVFSISG-RGTVVTGRVERGTLKKGAEIEI 287
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Frame = +1
Query: 88 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 249
+V+ +D PGH + M+ G + D A+L+I G QT EH + +
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145
Query: 250 KHILILQNKIDLVKEGQAKEQHEQIVK----FVQ--GTVAEGAPIIPIS 378
K +++ NK+D G ++ + E+IVK F++ G + P +P+S
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Frame = +1
Query: 88 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 249
+V+ +D PGH + M+ G + D A+L+I G QT EH + +
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145
Query: 250 KHILILQNKIDLVKEGQAKEQHEQIVK----FVQ--GTVAEGAPIIPIS 378
K +++ NK+D G ++ + E+IVK F++ G + P +P+S
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 44.0 bits (99), Expect = 4e-05
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Frame = +1
Query: 88 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 249
+V+ +D PGH + M+ G + D A+L+I G QT EH + +
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145
Query: 250 KHILILQNKIDLVKEGQAKEQHEQIVK----FVQ--GTVAEGAPIIPIS 378
K +++ NK+D G ++ + E+IVK F++ G + P +P+S
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVS 192
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +1
Query: 85 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP------QTSEHLAAIEIMK 246
R S +D PGH + M+NGA+ D +L+I+ + QT EH
Sbjct: 316 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG 375
Query: 247 LKHILILQNKIDLVKEGQAKEQHEQIV 327
+ H++++ NK+D ++E++++ V
Sbjct: 376 INHLVVVINKMDEPSVQWSEERYKECV 402
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 38.7 bits (86), Expect = 0.002
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Frame = +1
Query: 91 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQ 270
++ +D PGH A +++ A + +LL+ ++ Q QT + L I +L
Sbjct: 126 LNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGI-QAQTLSNFYMAFSQNLVIIPVL- 183
Query: 271 NKIDLVKEGQAKEQHEQIVKFVQG-TVAEGAPIIPISAQLKYNIEVLCEYITKKIPVPLR 447
NK+DL + +++ Q + PI+ +S++ N+E + I +KIP P
Sbjct: 184 NKVDL----PTADVDRTLIQVQQTFDIPMSKPIL-VSSKTGKNVEQILPEIIQKIPPPKG 238
Query: 448 DFTSPPRMIVIRSF 489
+P R ++I S+
Sbjct: 239 SENAPLRCLLIDSW 252
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 38.3 bits (85), Expect = 0.002
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 85 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILI 264
+ ++F+D PGH A GA + D +L++AG++ +PQT E + I+ + +++
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGV-KPQTVEAIKHIQSADVP-VVV 277
Query: 265 LQNKIDLVKEGQAKEQHEQIVKFVQGTVAEG-APIIPISAQ 384
K D K + + +Q G IIPISA+
Sbjct: 278 ALTKSDRPGTPIHKIYEQLLNNGIQVEALGGETQIIPISAK 318
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 37.1 bits (82), Expect = 0.005
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Frame = +1
Query: 103 DCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILI 264
D PGH ++ M+ GA+ D A+L++ +++ QT EH + + + I++
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 265 LQNKIDLVKEGQAKEQH------EQIVKFVQGTVAEGAPIIPISA 381
NK+DL+ + + Q + ++K V G +PISA
Sbjct: 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMV-GFKTSNVHFVPISA 364
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 30.3 bits (65), Expect = 0.58
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 941 VLNDPIFTRRTSFLTNFWTLAAFLSPSVRTPSKRFKR**DTSSLTKIPG 795
V++ TRR + L++FWTL L ++ P +FKR SS +IPG
Sbjct: 294 VVSTKKITRRKNTLSDFWTLLHSLPSTLLWP--QFKRKYRKSSTLQIPG 340
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 731 SNQRCAVLIDLWDKY*EQLDVYREFLSNSKYLIIF*NVCLACALKEIKR 877
+ Q ++LIDLW + V ++N+K+L ++ + LA +L + R
Sbjct: 906 TTQATSILIDLWVAFWTNSSVNSPDVNNNKFLFVYGTMLLAYSLLDFLR 954
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 100 VDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKI 279
+D PGH+ G ++ + A+L+I +PQT E + + K ++ L NK+
Sbjct: 554 IDTPGHESFTNLRSRGTSLCNIAILVIDIMHGL-EPQTIESIRLLRDQKTPFVVAL-NKV 611
Query: 280 D 282
D
Sbjct: 612 D 612
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 2.3
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = -2
Query: 821 TSSLTKIPGKHPTAPNTCPTSLSARHSVGSIFVPTPIRP--PGTAYCSSFCSANSETMRE 648
TSS PT +C TS S + GS + TPI P P T+ S+ +
Sbjct: 155 TSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSS 214
Query: 647 NMGRQVNLPSASLLTKPGRTSISIPT 570
LP+ S TS SIPT
Sbjct: 215 TDTNSSPLPTTSTSC---TTSTSIPT 237
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 5.4
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = -2
Query: 380 ADMGIIGAPSATVP*TNFTICSCCSLACPSLTKSILFCNIKICFSFIISMAAKCSLVWGC 201
A + + S+ V + ++ S ++ S T + + I S +++ A+ + G
Sbjct: 185 ASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPTSSSSIALSSVVASASVSAANKGV 244
Query: 200 GQDSLPAMSSNAASITAAPLSIVAIRMS*PGQST 99
S PA+SS AAS +A S+V+ S ST
Sbjct: 245 ---STPAVSSAAASSSAVVSSVVSSATSVAASST 275
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -2
Query: 725 VPTPIRPPGTAYCSSFCSANSETMRENMGRQVNLPSASLLTKPGRTSIS 579
+P P + G + + E +G Q+NLP +L K S++
Sbjct: 1090 IPNPKKQSGNTSADQVLFNQPKQVTEKLGVQLNLPKTKILEKVSSHSLA 1138
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 791 HPTAPNTCPTSLSARHSVGSIFVPTPIRPPGTAYCSSFCSANSETMREN 645
+P NT + L RH V S+ + PPG + + S + R N
Sbjct: 701 YPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSN 749
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = -2
Query: 866 PSVRTPSKRFKR**DTSSLTKIPGKHPTAPNTCPTSLSARHSVGSIFVPTPIRPP 702
P+VR+P F D S + K PG N P S S R SV S+ + +RPP
Sbjct: 192 PNVRSPKVGFNAKSDDSPVVKSPGS-----NDKP-SASPRISVRSLGNSSVVRPP 240
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 526 VDRQPRNQAYLHRMNE*QSYEEAM*NPLGVRESFLLYTRRGPQY 395
+DR P N Y + + YE+A L E LY++ +Y
Sbjct: 249 LDRNPDNHQYYYNLQRAYGYEDASGKVLDSAEWLNLYSQLAKRY 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,280,322
Number of Sequences: 5004
Number of extensions: 90036
Number of successful extensions: 271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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