Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F18
         (1253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.47 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   2.5  
07_01_1035 + 8998266-8998349,8999394-8999441,8999714-8999792,899...    30   4.4  
12_01_0816 + 7502669-7503145                                           29   7.7  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 780 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 601
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 600 LVS 592
             S
Sbjct: 137 RAS 139


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 500 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 658
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>07_01_1035 +
           8998266-8998349,8999394-8999441,8999714-8999792,
           8999874-8999978,9000219-9000328,9000510-9000691,
           9000909-9000978,9001066-9001239,9001373-9001477,
           9001684-9001815,9002062-9002157,9002273-9002572
          Length = 494

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 953 CFF-SVAVVRPPLQEXCSTAYIPRXXNPVTSG 861
           CFF  +++V+PP+ E     +IPR   P  +G
Sbjct: 160 CFFVEMSIVKPPVNEVLQGLFIPRLSGPGATG 191


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 799 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 668
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,922,930
Number of Sequences: 37544
Number of extensions: 632568
Number of successful extensions: 1869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)