Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F17
         (1274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    44   5e-05
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    28   3.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   7.3  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   7.3  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
 Frame = +1

Query: 292 NLLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIPA 471
           +L+     +K L ++  L   L        L +HG+ ++Y  +  +        +Y    
Sbjct: 15  DLIDSVTGKKSLLLERDLSGILGQIVTTNTLQEHGIPQVYWFNENIPNDIEKKTIYLCRP 74

Query: 472 CIIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAW 651
                K V   +         I       +I++P     F+++L+ +G++G + +  +  
Sbjct: 75  TYENAKLVATHVRQFQRDMLRIEST----VIVLPTSNILFETVLQEEGVFGELLVTEWPL 130

Query: 652 ELMVLDDQLLSLEL-PFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAG 828
             + LD  LLSLEL P   ++  + ++   L     +      V+GR       G  +A 
Sbjct: 131 HAVPLDKDLLSLELGPEKLEESLLQRSTDALIDFERTHGRFPRVSGR-------GPYAAK 183

Query: 829 VLDMLE-IYNE--TYSRNXVDTNNXRDXGALLVIXRTQDYASSLXTPATYXGW 978
           +L++LE  Y E  T +   V+        ++L++ R+ D  +   T  TY G+
Sbjct: 184 MLELLEKTYQEEATINFGKVEGEISALYDSVLLVDRSLDRITPFLTQLTYFGF 236


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)
 Frame = +1

Query: 319 KXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIPACIIKYKCVL 498
           K L  D +  + + S   +  L +HGV     +     P A+   +YF+       + ++
Sbjct: 47  KVLIFDKAGSETISSVLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELII 106

Query: 499 DQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVV-KLHAFAWELMVLDDQ 675
           + +S  + ++  +     F   I   +L  F  +        ++ +++      +VL+  
Sbjct: 107 EDLSKGLYESAYVC----FSSTISRALLEQFAELASKTNTSHMIHQVYDQYLNYVVLESD 162

Query: 676 LLSLELPFLFKQLF-VDQNQSLLSG----VAMSLWTLFHVTGR-PKVMCSFGKLSAGVLD 837
             SL+LP +F        +++L++     +   L+++    G  P + C  G  +  V  
Sbjct: 163 FFSLQLPKIFHTFHNPSSDEALINSRVQDIVNGLFSVIVTLGTIPIIRCPQGSAAEMVAQ 222

Query: 838 MLEIYNETYSRNXVD---TNNXRDXGALLVIXRTQDYASSLXTPATY 969
            L    + +  N  D   + N +    L+++ RT D    +    TY
Sbjct: 223 KLNQRLKDHLMNTKDAFVSVNPKPRPILILLDRTVDLIPMINHSWTY 269


>SPBC19C7.08c |||leucine carboxyl
            methyltransferase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 927  YPGLCV-KSXNSSYIQXMXKEIFSINXGFWIEC 1022
            YPG  V  S    +IQ   +   S+N G+W  C
Sbjct: 35   YPGFTVGHSYYQPFIQKSPRRSPSVNRGYWTRC 67


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 1088 SXRLYFMLVHYQNXLPFILCILTFNPESXVYTEYF 984
            S  L   L HY   +P ++C L+ NP+S  Y  Y+
Sbjct: 150  STLLQCCLKHYDLCIP-VICTLSSNPKSAKYLLYY 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,974,945
Number of Sequences: 5004
Number of extensions: 76209
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)