Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F17
(1274 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sortin... 85 4e-16
AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens ... 85 4e-16
AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sortin... 85 4e-16
AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sortin... 85 4e-16
AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein. 62 4e-09
BC016617-1|AAH16617.1| 596|Homo sapiens vacuolar protein sortin... 54 1e-06
AF439857-1|AAL33577.1| 596|Homo sapiens vacuolar sorting protei... 54 1e-06
>BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sorting
33 homolog B (yeast) protein.
Length = 617
Score = 85.4 bits (202), Expect = 4e-16
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 1/228 (0%)
Frame = +1
Query: 295 LLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIPAC 474
LL Q +K L I+ L+ L+ V L QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 475 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 654
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 655 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVL 834
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G P C +G +
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG-PFPNC-YG-IGRCAK 201
Query: 835 DMLEIYNETYSRNXVDTNNXR-DXGALLVIXRTQDYASSLXTPATYXG 975
E++ +T R + G + ++ R D+ ++L + Y G
Sbjct: 202 MAYELWRNLEEEEDGETKGRRPEIGHIFLLDRDVDFVTALCSQVVYEG 249
>AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
Length = 617
Score = 85.4 bits (202), Expect = 4e-16
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 1/228 (0%)
Frame = +1
Query: 295 LLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIPAC 474
LL Q +K L I+ L+ L+ V L QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 475 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 654
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 655 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVL 834
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G P C +G +
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG-PFPNC-YG-IGRCAK 201
Query: 835 DMLEIYNETYSRNXVDTNNXR-DXGALLVIXRTQDYASSLXTPATYXG 975
E++ +T R + G + ++ R D+ ++L + Y G
Sbjct: 202 MAYELWRNLEEEEDGETKGRRPEIGHIFLLDRDVDFVTALCSQVVYEG 249
>AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sorting
protein 33B protein.
Length = 617
Score = 85.4 bits (202), Expect = 4e-16
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 1/228 (0%)
Frame = +1
Query: 295 LLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIPAC 474
LL Q +K L I+ L+ L+ V L QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 475 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 654
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 655 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVL 834
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G P C +G +
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG-PFPNC-YG-IGRCAK 201
Query: 835 DMLEIYNETYSRNXVDTNNXR-DXGALLVIXRTQDYASSLXTPATYXG 975
E++ +T R + G + ++ R D+ ++L + Y G
Sbjct: 202 MAYELWRNLEEEEDGETKGRRPEIGHIFLLDRDVDFVTALCSQVVYEG 249
>AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sorting
33B protein.
Length = 617
Score = 85.4 bits (202), Expect = 4e-16
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 1/228 (0%)
Frame = +1
Query: 295 LLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIPAC 474
LL Q +K L I+ L+ L+ V L QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 475 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 654
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 655 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVL 834
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G P C +G +
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG-PFPNC-YG-IGRCAK 201
Query: 835 DMLEIYNETYSRNXVDTNNXR-DXGALLVIXRTQDYASSLXTPATYXG 975
E++ +T R + G + ++ R D+ ++L + Y G
Sbjct: 202 MAYELWRNLEEEEDGETKGRRPEIGHIFLLDRDVDFVTALCSQVVYEG 249
>AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein.
Length = 528
Score = 62.1 bits (144), Expect = 4e-09
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
Frame = +1
Query: 505 ISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWELMVLDDQLLS 684
I+SL++ + + +I P+ + + +LE +G+YG V +A+ L+ LD LLS
Sbjct: 6 IASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFSLLPLDVDLLS 65
Query: 685 LELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVLDMLEIYNETY 864
+ELP F+ F++ +Q ++ VA +L L + G P C +G + E++
Sbjct: 66 MELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG-PFPNC-YG-IGRCAKMAYELWRNLE 122
Query: 865 SRNXVDTNNXR-DXGALLVIXRTQDYASSLXTPATYXG 975
+T R + G + ++ R D+ ++L + Y G
Sbjct: 123 EEEDGETKGRRPEIGHIFLLDRDVDFVTALCSQVVYEG 160
>BC016617-1|AAH16617.1| 596|Homo sapiens vacuolar protein sorting
33 homolog A (S. cerevisiae) protein.
Length = 596
Score = 54.0 bits (124), Expect = 1e-06
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 1/230 (0%)
Frame = +1
Query: 289 QNLLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIP 468
+ L +C K + D L L +H V+K++ + P A+ + F
Sbjct: 24 REFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFV 83
Query: 469 ACIIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYG-VVKLHAF 645
++ ++D I+ + FHI+ +P+ + L+ G+ G + +
Sbjct: 84 RPRLE---LMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEY 140
Query: 646 AWELMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSA 825
+ +L+ D LLS+E FK+ +++ +Q+ L A L TL + G + G+ +
Sbjct: 141 SLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECAR 200
Query: 826 GVLDMLEIYNETYSRNXVDTNNXRDXGALLVIXRTQDYASSLXTPATYXG 975
V +M+ ++ + D LL++ R D + L T TY G
Sbjct: 201 QVANMMIRMKREFTGSQNSIFPVFDN--LLLLDRNVDLLTPLATQLTYEG 248
>AF439857-1|AAL33577.1| 596|Homo sapiens vacuolar sorting protein
33A protein.
Length = 596
Score = 54.0 bits (124), Expect = 1e-06
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 1/230 (0%)
Frame = +1
Query: 289 QNLLXQCGAQKXLXIDPSLIKALESXCGVXWLSQHGVDKIYKMDPQLGPTANPNRVYFIP 468
+ L +C K + D L L +H V+K++ + P A+ + F
Sbjct: 24 REFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFV 83
Query: 469 ACIIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYG-VVKLHAF 645
++ ++D I+ + FHI+ +P+ + L+ G+ G + +
Sbjct: 84 RPRLE---LMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEY 140
Query: 646 AWELMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSA 825
+ +L+ D LLS+E FK+ +++ +Q+ L A L TL + G + G+ +
Sbjct: 141 SLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECAR 200
Query: 826 GVLDMLEIYNETYSRNXVDTNNXRDXGALLVIXRTQDYASSLXTPATYXG 975
V +M+ ++ + D LL++ R D + L T TY G
Sbjct: 201 QVANMMIRMKREFTGSQNSIFPVFDN--LLLLDRNVDLLTPLATQLTYEG 248
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,709,363
Number of Sequences: 237096
Number of extensions: 2599973
Number of successful extensions: 3686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3682
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18275348360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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