Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F16
         (1390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    48   4e-06
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    35   0.023
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    35   0.023
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    27   8.1  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    27   8.1  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
 Frame = +3

Query: 387 NDHXLLRWLRARQWDPQAAEXMLRDSLKWREKWEVDTTLPS--WQAPEVLEKHFPSGSTG 560
           +D  LLR+LRAR+++ Q +  M     KWR+++ VD  + +  +   E + K++P     
Sbjct: 49  DDATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHK 108

Query: 561 FDKEGSPVIIVPFVGLDVWGLLHSFTRXEVIRMILKHXENYLAIARKQALTHGPDALKVT 740
            D +G PV +     +D+   L+  T  E +   L +    LA+ R  A +     L  T
Sbjct: 109 TDIDGRPVYVEQLGNIDL-KKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLIET 167

Query: 741 --VIFDLEGXXI 770
              I DL+G  I
Sbjct: 168 SCTIMDLKGVGI 179


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 366 DVLRPEHNDHXLLRWLRARQWDPQAAEXMLRDSLKWREK 482
           D +  +  D  LLR+LRAR+W+ +AA  M   ++ WR +
Sbjct: 116 DAVNCDDPDGLLLRFLRARKWNVEAALEMFMKTVHWRSR 154


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 399 LLRWLRARQWDPQAAEXMLRDSLKWREKWEVDTTLPSWQAPEVLEKHFPSGST--GFDKE 572
           +LR+LRA +W    A+  + D+L WR  + V+   P     E+ E++        G+DK+
Sbjct: 638 ILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPD----EIQEENATGKQVLLGYDKD 693

Query: 573 GSPVI 587
           G P +
Sbjct: 694 GRPCL 698


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +3

Query: 489 VDTTLPSWQAPEVLEKHFPSGSTGFDKEGSPVIIVPFVGL-DVWGLLHSFTRXEVIRMIL 665
           VDT  P     E L+ HFP       K+     + P V L  +   +    + E  R  +
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADS--LFPIVSLASICAKVTRDIQLECARESI 236

Query: 666 KHXENYLAIARKQALTHGPDALKVTVIFDLEGXXIRQYAWKPXAEMV 806
           +  EN+ +     A T     + V  IF  +G  +R Y+WK   +++
Sbjct: 237 R-TENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVR-YSWKTAKDLL 281


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +3

Query: 390 DHXLLRWLRARQWDPQAAEXMLRDSLKWREKWEVDTTLPSWQAPEVLEKHFPSGST---- 557
           D  LLR+L+AR++    +  ML +++ WR++  + + +   +    L ++F   S     
Sbjct: 52  DLTLLRFLKARKFVVTDSSDMLANAIVWRQQANLRSIMV--RGENGLNQNFVKASMYFIW 109

Query: 558 GFDKEGSPVIIV 593
           G DK+G  ++ +
Sbjct: 110 GQDKKGRAIVFL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,009,578
Number of Sequences: 5004
Number of extensions: 66733
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 769037886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)