Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F15
         (1272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    30   4.5  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    29   5.9  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   7.8  

>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 570 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 659
           L+R +GC +  VPC P SG+E   F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202


>04_04_1694 -
           35419278-35419565,35419744-35419861,35420404-35420490,
           35420909-35420931,35421647-35421843,35421964-35422159,
           35422382-35422481,35423288-35423374,35424053-35424282,
           35424678-35424763,35425148-35425271,35425415-35428573,
           35430014-35430019
          Length = 1566

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 337 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 504
           ++E+WSGA    SA  K KK  +    ++    DG  S       VEIV+     + L  
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676

Query: 505 LDYSIGEKN 531
           ++ S  E N
Sbjct: 677 VELSFAENN 685


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 629  GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 534
            G GT S G+   YT H  K  P     +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,387,172
Number of Sequences: 37544
Number of extensions: 613356
Number of successful extensions: 1863
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)