Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F15
         (1272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   3.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   5.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 206 ANVRSPQPRFGXPWRAAGADGERGHREYERYHPM 105
           A+   P P +  PW  +  + +RG + Y RY  +
Sbjct: 252 ASANLPSPLY--PWMRSQFERKRGRQTYTRYQTL 283


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 879 ASIRLFQLHQLPEVTFVGLVPGR*SLLRFLQ 787
           +++R+ + H+L  V  VG+ PG+  L   ++
Sbjct: 444 SALRILEKHELANVHPVGINPGKMQLKNIIK 474


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 278 ETSAASFLVTSWL*AVAAWLTSTIANVRSPQPR 180
           +    +F+VTSWL  + +++   I  V +P+ R
Sbjct: 653 QPGVTAFIVTSWLGYMNSFVNPVIYTVFNPEFR 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,912
Number of Sequences: 438
Number of extensions: 5685
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)