Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F13
         (1284 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    27   0.30 
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    24   2.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   4.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 440 VFGQSGAGNNW-AKGHYTEGAELVDAVLDVVRKECENCDCLQGIPT 574
           +  + G  N + A+  Y  G+E   +++ +   +C  C C  G PT
Sbjct: 839 ILAEGGCPNLYDARKPYVNGSEYHPSIVSLGEYKCVTCKCENGKPT 884


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 494 GAELVDAVLDVVRKECENCDCLQ 562
           G ++  A+ +++ K CE CD  Q
Sbjct: 49  GNQIKGALPEIIGKNCERCDSRQ 71


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = +2

Query: 269 SDLQLERISVYYNEASVATAESGG-------KYVPRAILLDLEP 379
           S L+ +++S YYNE+ V  +  G        KY P   ++D  P
Sbjct: 119 STLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNPSIIDPGP 162


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = +2

Query: 269 SDLQLERISVYYNEASVATAESGG-------KYVPRAILLDLEP 379
           S L+ +++S YYNE+ V  +  G        KY P   ++D  P
Sbjct: 119 STLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNPSIIDPGP 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,676
Number of Sequences: 336
Number of extensions: 3683
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37816048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)