Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F13
         (1284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   215   8e-57
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   120   6e-28
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   116   7e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   110   5e-25
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        30   0.79 
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   9.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  215 bits (526), Expect = 8e-57
 Identities = 96/138 (69%), Positives = 113/138 (81%)
 Frame = +2

Query: 152 MREXVHLQAGQCGNQXGAKFWEXISEXHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 331
           MRE VH+QAGQCGNQ GA FW  I++ HG+D  G+Y GTS+ Q ER++VY+NEA+     
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55

Query: 332 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 511
            GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56  -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114

Query: 512 AVLDVVRKECENCDCLQG 565
           AVLDVVR+E E CD LQG
Sbjct: 115 AVLDVVRREAEACDALQG 132



 Score =  143 bits (346), Expect = 5e-35
 Identities = 73/144 (50%), Positives = 85/144 (59%)
 Frame = +3

Query: 534 RSVRTAIASRGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVE 713
           R      A +GFQ                   KIREEYPDR+M T+SV P+PK SDTVVE
Sbjct: 122 REAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVE 181

Query: 714 PYNAVLSIHQLVENTDETYCIDNEXLYDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLR 893
           PYNA LS+HQLVEN+DET+CIDNE L  I   TLK+ +P+Y DLNHLVS  M+GVTT  R
Sbjct: 182 PYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFR 241

Query: 894 XPRTAERRPAQAGGQMVPFXXXXF 965
            P        +    MVPF    F
Sbjct: 242 FPGELNSDLRKLAVNMVPFPRLHF 265


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  120 bits (288), Expect = 6e-28
 Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
 Frame = +2

Query: 152 MREXVHLQAGQCGNQXGAKFWEXISEXHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 328
           MRE + +  GQ G Q G   WE     HGI P G    T + ++ + + Y N+      +
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58

Query: 329 ESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 505
           E+G GK+VPR+I +DLEP  +D VR+G Y  LF P+  V G+  A NN+A+GHYT G E+
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118

Query: 506 VDAVLDVVRKECENCDCLQG 565
           +D+VL+ +R+  +NC  LQG
Sbjct: 119 IDSVLERIRRMADNCSGLQG 138



 Score = 89.8 bits (213), Expect = 7e-19
 Identities = 39/88 (44%), Positives = 59/88 (67%)
 Frame = +3

Query: 630 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXLYDICYR 809
           ++  EY  +    +SV P+P+VS +VVEPYN+VL+ H  ++N+D T+ +DNE  YDIC R
Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219

Query: 810 TLKVPNPTYGDLNHLVSLTMSGVTTCLR 893
            L +  PTY +LN L++  +S +T  LR
Sbjct: 220 NLDIERPTYENLNRLIAQVVSSITASLR 247


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  116 bits (279), Expect = 7e-27
 Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
 Frame = +2

Query: 152 MREXVHLQAGQCGNQXGAKFWEXISEXHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 325
           MRE + +  GQ G Q G   WE     HGI P G     +  Q      S +++E     
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58

Query: 326 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 505
               GKYVPR+I +DLEP  +D VR+G Y  LF P+  + G+  A NN+A+GHYT G EL
Sbjct: 59  ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114

Query: 506 VDAVLDVVRKECENCDCLQG 565
           VD V D +R+  +NC  LQG
Sbjct: 115 VDEVTDKIRRIADNCSGLQG 134



 Score = 87.0 bits (206), Expect = 5e-18
 Identities = 41/112 (36%), Positives = 65/112 (58%)
 Frame = +3

Query: 630 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXLYDICYR 809
           ++  EY  +    +SV P+P+VS +VVEPYN+VL+ H  ++  D T+ +DNE  YDIC R
Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215

Query: 810 TLKVPNPTYGDLNHLVSLTMSGVTTCLRXPRTAERRPAQAGGQMVPFXXXXF 965
            L +  P+Y +LN L++  +S +T  LR   +     A+    +VP+    F
Sbjct: 216 NLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHF 267


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  110 bits (264), Expect = 5e-25
 Identities = 51/139 (36%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
 Frame = +2

Query: 155 REXVHLQAGQCGNQXGAKFWEXISEXHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 334
           RE + LQAGQCGNQ G++FW+ +   HGI P G     +   ++R  V++ ++       
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56

Query: 335 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELV 508
             +Y+PRAIL+DLEP  ++ + S  YG L+ P+N +  ++  GAGNNWA G Y+    + 
Sbjct: 57  DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIF 115

Query: 509 DAVLDVVRKECENCDCLQG 565
           + ++D++ +E +  D L+G
Sbjct: 116 EDIMDMIDREADGSDSLEG 134



 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = +3

Query: 630 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXLYDICY 806
           ++ + YP +I+ TYSV P S  VSD VV+PYN++L++ +L  N D    +DN  L  I  
Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215

Query: 807 RTLKVPNPTYGDLNHLVSLTMSGVTTCLRXP 899
             L   NPT+   N LVS  MS  TT LR P
Sbjct: 216 DRLHTQNPTFHQQNQLVSTVMSASTTTLRYP 246


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 473 AKGHYTEGAELVDAVLDVVRKECENCDCLQGIP 571
           A+GH   G ELV A  D +RK+ EN   L+  P
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALEVCP 215


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 263 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 376
           G+SD+ +  +S +  EAS  +  S    VP+ +L D +
Sbjct: 49  GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,474
Number of Sequences: 5004
Number of extensions: 57907
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)