Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F12
         (1257 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus ...    37   1.3  
UniRef50_A4VE37 Cluster: Putative uncharacterized protein; n=1; ...    37   1.3  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.7  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   2.9  
UniRef50_Q5CQE6 Cluster: Putative uncharacterized protein; n=3; ...    34   6.7  
UniRef50_Q8I330 Cluster: Putative uncharacterized protein PFI059...    34   8.9  

>UniRef50_Q05FQ6 Cluster: Seryl-tRNA synthetase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Seryl-tRNA synthetase -
           Carsonella ruddii (strain PV)
          Length = 336

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 874 Y*FLTTNNIFFRQSLHLQNVNAFTFNFFLNKICRYLFKLNLFTSYMFIL-TFN 719
           Y  +  N+I  +++  + N N    NFFL K   + FK+N FT+Y +I  TFN
Sbjct: 3   YKIILINSIIKKENFSIFNFNKKNKNFFLKKKLNFFFKIN-FTNYNYIYNTFN 54


>UniRef50_A4VE37 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 202

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = -2

Query: 749 YFLHVYINI*LKFNYLQIAQFVNHSVLIQSNSKINIIICLFTVM-GILLNRQIKMDANKR 573
           +FL  Y NI    NY++I QFVN+ +L Q      IIIC+F ++  I +        N  
Sbjct: 44  HFLQ-YFNINKLINYIKIVQFVNYFILKQCLFFYFIIICIFEILIKIFIFIFFSFTINSF 102

Query: 572 SFSNLTIE---KL*FYSRD 525
            F N   E   K+ F+++D
Sbjct: 103 QFFNSIFELHFKVFFFTQD 121


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 1.7
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +3

Query: 276 AGWWYPPARTHKTSYH 323
           A WWY PARTHK SYH
Sbjct: 569 AEWWYLPARTHKRSYH 584


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.5 bits (78), Expect = 2.9
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = +1

Query: 73  FXLFIFYSLR*MDELTVHLVLSGYRSP 153
           F L  F  LR +DELT HLVLSGY SP
Sbjct: 149 FCLSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q5CQE6 Cluster: Putative uncharacterized protein; n=3;
           Apicomplexa|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 1862

 Score = 34.3 bits (75), Expect = 6.7
 Identities = 12/36 (33%), Positives = 27/36 (75%)
 Frame = -2

Query: 713 FNYLQIAQFVNHSVLIQSNSKINIIICLFTVMGILL 606
           F+Y+++ Q  NH +++++N + N++IC F ++ I+L
Sbjct: 693 FHYIKV-QINNHHIIMENNLENNLVICKFQILEIIL 727


>UniRef50_Q8I330 Cluster: Putative uncharacterized protein PFI0595c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0595c - Plasmodium falciparum
           (isolate 3D7)
          Length = 453

 Score = 33.9 bits (74), Expect = 8.9
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 877 FY*FLTTNNIFFRQSLHLQN-VNAFTFNFFLNKICRYLFKLNLFTSYMFILTFN 719
           F  FL  +NIF   +  LQN V +FT ++FL   C YL+ L +F  Y     FN
Sbjct: 325 FIFFLMISNIF--PATKLQNFVFSFTSSYFLLSFCSYLYNLFVFLMYDKTKRFN 376


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 945,199,470
Number of Sequences: 1657284
Number of extensions: 18098822
Number of successful extensions: 37872
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37865
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 127555079085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)