Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F12
         (1257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    30   0.58 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   3.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   7.2  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 411 TTDPFSSE*PKLTRFRNQVWPDKSTKSHYGGRTSCESARVGTTTLPISAVK 259
           TTDPFSS+  + T   + + P+K+T + +  + S  S  V   T   S+ +
Sbjct: 613 TTDPFSSQTKEATSKPSSISPNKATTNIFTSQASLSSQGVARETSSASSYR 663


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 865  LTTNNIFFRQSLHLQNVNAFTFNFFLNKIC 776
            L+  ++FF+ +++  + N ++FNFFL  +C
Sbjct: 1483 LSEEDVFFQDNINYAS-NRYSFNFFLFSVC 1511


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 389 NSLNSHVSETRYGLTKVLRAIMVVGRLVSPRGWVP 285
           + +N HV +T    T+ L  + +   LVSPR   P
Sbjct: 497 DEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEP 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,010,104
Number of Sequences: 5004
Number of extensions: 77014
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)