Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F12
         (1257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    30   4.0  
AF022973-4|AAC25798.1|  314|Caenorhabditis elegans Temporarily a...    30   4.0  
AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    29   5.2  

>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 868 FLTTNNIFFRQSLHLQNVNAFTFNFFLNKI-CRYLFKLNLFTSYMFILTFN 719
           FL   NIF +   H++ +  F F +   KI  +  FK NLF    F L FN
Sbjct: 304 FLIFLNIFKKNYYHIRKIRFFNFFYISKKILTKKFFKKNLF----FFLIFN 350


>AF022973-4|AAC25798.1|  314|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 57 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 50  VAISLKWFXIYLFFIRLDRWTSSQSTWC*VVTGAHTHLQRKGATHL 187
           + ISL  F +Y+F+  +D   ++ ++W  VVTGA   + R  A  L
Sbjct: 29  IKISLNIFGVYIFYTPIDLKRTAGASWA-VVTGATDGIGRSYALDL 73


>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -2

Query: 434 VCCLVYSKQQTLSLANSLNSHVSETRYGLTKVLRAIMVVGRLVSPRGWVPP 282
           +  ++YS  + +++  +L  HVS   +   K     ++   L +P  +VPP
Sbjct: 206 IAIIIYSTVRMINILKNLEKHVSAVNFKKHKAAVGSLIAQFLTTPIAFVPP 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,321,541
Number of Sequences: 27780
Number of extensions: 448232
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)