Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F12
         (1257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   9.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   9.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 70  VFXLFIFYSLR*MDELTVHLVLSGYRSPYTSTT*RRHPP*DISSKVSI*LQRL-PHPTNR 246
           V  +F+F +L  M+   V++VL    +P         PP   S   S  L ++    T  
Sbjct: 313 VCTVFVFMAL--MEYCLVNIVLGDSDTPPKPAP--PPPPPSSSGPDSAKLDKIFDIATKE 368

Query: 247 NALLLHGRNRQGGGTHPRGLT 309
           NA+LL GR+++     P G T
Sbjct: 369 NAMLLSGRSQKSTTGPPPGPT 389


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 231  PPYKPKCITASRQK*AGWWYPPARTH 308
            PP   +C   + Q     W PP  TH
Sbjct: 1114 PPEDVRCAALTSQSLQVSWQPPPNTH 1139


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 231  PPYKPKCITASRQK*AGWWYPPARTH 308
            PP   +C   + Q     W PP  TH
Sbjct: 1110 PPEDVRCAALTSQSLQVSWQPPPNTH 1135


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 819 FCKCKDCLKKIL 854
           +CKC DCL  I+
Sbjct: 105 YCKCDDCLLGIV 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 341 VLRAIMVVGRLVSPRGWVPPPCLFLP*SSNA 249
           V+ A  VVG  +S   W+ P  + +P S++A
Sbjct: 532 VVYACNVVGSGLSHGNWIYPASMTIPGSNSA 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,375
Number of Sequences: 438
Number of extensions: 5603
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42982554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)