Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F11
         (1302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   263   4e-71
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    57   6e-09
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    48   4e-06
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    36   0.012
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   2.5  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   4.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   5.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   7.5  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  263 bits (644), Expect = 4e-71
 Identities = 121/237 (51%), Positives = 171/237 (72%)
 Frame = +2

Query: 233 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 412
           D +NR +K G ++RVVG+LLG      V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M 
Sbjct: 29  DSYNRSAK-GTKRRVVGILLG-QNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMN 86

Query: 413 GMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 592
            MFKK+NA EK+VGWYHTGP+L  +D+ IN L+++Y PN VLVIID KPK +GLPT AY 
Sbjct: 87  EMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYF 146

Query: 593 AVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIKDTTVGSLSQRITNQLLGLK 772
           A++E+ DDG+ +SRTF H+PS I           HLLRD +D +VG+L+ R+T Q   L+
Sbjct: 147 AIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQ 206

Query: 773 GLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNXYVKTNDQ 943
           GL  +LTEI DYL +V  G LP+NH I+ +LQ +FNLLP+I +   +    +++  Q
Sbjct: 207 GLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQALESEAQ 263


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = +2

Query: 233 DHFNRMSKIGNQKRVVGVLLGCWRAKG-VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENM 409
           DH  R S+  N +RV+G LLG     G  +++ + FAVP +E  +   V   + +Y   M
Sbjct: 35  DHSTRKSE--NNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEV---EMEYHRAM 89

Query: 410 YGMFKKVNAREKVVGWYHTGPKLHQNDIAINEL 508
           Y +  K N RE VVGWY T P L      I  L
Sbjct: 90  YHLHLKANPREVVVGWYATSPDLDAFSALIQNL 122



 Score = 31.1 bits (67), Expect = 0.35
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 776 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNXYVKTNDQSLVV 955
           L S +  + DY+  V  GS P N  +   L   F+L+P +   +F         D  +VV
Sbjct: 223 LLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVV 282

Query: 956 YXA 964
           Y A
Sbjct: 283 YLA 285


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +2

Query: 245 RMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFK 424
           R  + G    V+G++LG +     + V + FA+P  +     SV  +D  + +NM  M K
Sbjct: 42  RHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMP--QSGTGVSVEAVDPVFQKNMMDMLK 99

Query: 425 KVNAREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 550
           +    E VVGWYH+ P     L   DI   +   +  P +V V++D
Sbjct: 100 QTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVD 145


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
 Frame = +2

Query: 260 GNQKRVVGVLLGCWRAKGV-LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNA 436
           G    V+G + G  + +G  L + +SFA+P +  +   +      +Y    + + K V  
Sbjct: 52  GMPLEVMGYVQG--KVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYR 109

Query: 437 REKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAK 556
            E V+GWYH+ P     L   D+      ++Y    V V++D K
Sbjct: 110 HENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPK 153


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 NRESETSSRCSIGLLESQGCLRRIEQLRSPV 348
           NRE E SS   +G  +  GC R++ Q+R  V
Sbjct: 210 NREDEESSLAEVGYDDIGGCRRQMAQIRELV 240


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 71  MNNNFVI*NRTATNPEYISKNTYVKIIKMPSQE 169
           + NNFV  N  A   E   K TY+ +  MPS E
Sbjct: 49  LKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTE 81


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 468 PVWYQPTTFSLALTFLNIPYMFSK*SWSRNQTDLSLSSSS--NGTAKLFDTSKTPLALQQ 295
           PV     T S ++ + + P + S  S S + T +S +S++   GT+    TS T + L  
Sbjct: 585 PVTTTNCTTSTSVLYTSTP-ITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTS 643

Query: 294 PNRTPTT 274
            NRT TT
Sbjct: 644 TNRTSTT 650


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 380 TRQICLCRLHQTGLRSCSIRLRHPWLSNNPIEHRLLVSD 264
           T++  +      G+R C +++ HPWL +   E + +  D
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQSYTFEDKYVGRD 791


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 387 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRT 283
           S  Q+ LSL +SSNGT  +  T   P+ L +PN T
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVEL-KPNIT 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,085,325
Number of Sequences: 5004
Number of extensions: 77996
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)