Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F11
(1302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 341 7e-94
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 49 8e-06
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 39 0.007
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 37 0.027
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 29 5.4
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 341 bits (838), Expect = 7e-94
Identities = 155/242 (64%), Positives = 191/242 (78%)
Frame = +2
Query: 233 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 412
DHFNR+SK + KRVVGVLLG + LD+ NSFAVPFDEDDKDKS WFLD DYLE+MY
Sbjct: 53 DHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMY 112
Query: 413 GMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 592
GMF KV A+EK+VGWYHTGPKLH+NDIAINE ++R+CPN VLVIIDA+PK++GLPTEAY
Sbjct: 113 GMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKNIGLPTEAYI 172
Query: 593 AVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIKDTTVGSLSQRITNQLLGLK 772
V+EVHDDGTP +TFEHVPS+I HLLRDIKD T G+LSQRIT+QL+GL+
Sbjct: 173 EVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQRITDQLMGLR 232
Query: 773 GLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNXYVKTNDQSLV 952
GL SQL I YL + +G+LP+NH +IY +Q++ NLLPD+ + ++I + V+TNDQ +
Sbjct: 233 GLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEVLNLLPDVTHPDYIVSQNVQTNDQLMC 292
Query: 953 VY 958
VY
Sbjct: 293 VY 294
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 48.8 bits (111), Expect = 8e-06
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +2
Query: 251 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 430
+K Q++ +G L+G + KG + V+N FA+PF+E + D + D + + M KK
Sbjct: 29 AKNTGQEKCMGTLMGYYE-KGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKT 84
Query: 431 NAREKVVGWYHT 466
+ E+ VGW+ T
Sbjct: 85 SPNEQPVGWFLT 96
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 44.0 bits (99), Expect = 2e-04
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Frame = +2
Query: 245 RMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFK 424
R ++ G V+G++LG + ++V++ FA+P + +V +D Y + K
Sbjct: 41 RHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMP--QSGTSVTVESVDPVYQTKHMDLLK 98
Query: 425 KVNAREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIIDAKPKDLG-LPTEAY 589
V E VVGWYH+ P L D+ + P +V V++D G + +A+
Sbjct: 99 LVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAF 158
Query: 590 QAVEEVHDDGTPTSRTFE 643
++V ++ P + T E
Sbjct: 159 RSVNPLNLQIRPLAPTAE 176
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 39.1 bits (87), Expect = 0.007
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +2
Query: 254 KIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 433
+ G V+G++LG + ++V + FA+P + SV +D + M M K+
Sbjct: 48 RAGVPMEVMGLMLGEFVDDYTVNVIDVFAMP--QSGTGVSVEAVDPVFQAKMLDMLKQTG 105
Query: 434 AREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 550
E VVGWYH+ P L DI + +V V++D
Sbjct: 106 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVD 148
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 37.1 bits (82), Expect = 0.027
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 251 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 430
+K G ++G+L G A + + + FA+P + + + ++Y+ M
Sbjct: 70 AKRGGNLEIMGLLQGRIDANSFI-ILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTE 128
Query: 431 NAREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 550
+EKVVGWYH+ P L D++ L +++ V ++ID
Sbjct: 129 GRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVID 172
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 393 SWSRNQTDLSLSSSSNGTAKLFDTSKTP 310
+WS +T L S S++G+ KL+DT P
Sbjct: 282 AWSPTETGLLASCSADGSIKLWDTRSAP 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,586,225
Number of Sequences: 27780
Number of extensions: 434403
Number of successful extensions: 1180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3631930622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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