Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F11
         (1302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   1.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   1.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 359 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 493
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 359 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 493
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 446 VVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTP 625
           ++ W   GP+ H+    I ++  +Y P    +++  +PK   L     + + E+ +   P
Sbjct: 317 IINWNFRGPRTHRMPQLIRKIFLKYLPT---ILMMRRPKKTRL-----RWMMEIPNVTLP 368

Query: 626 TSRTFEHVPSEI 661
           TS T+   P+E+
Sbjct: 369 TS-TYSGSPTEL 379


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 133 IFTYIFGICCCSILYYKVIIH 71
           IF ++F +C   IL   V+IH
Sbjct: 14  IFNFVFAVCGLGILTLGVLIH 34


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +2

Query: 371 SVWFLDHDY-LENMYGMF 421
           S W+L+HDY LEN    F
Sbjct: 206 SGWYLNHDYNLENKLNYF 223


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 109 CCCSILYYKVIIH*TTRN*SNILXGNLKGFPI 14
           C C  LY ++ +H   R   +IL    KGF +
Sbjct: 326 CLCEYLYKQLELHTEDRAAESILEPAKKGFKL 357


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 653  LEHVQRSSKLVYHHRVLPLLL 591
            LEH     +L  HHR LP +L
Sbjct: 1088 LEHGAAGLRLCLHHRDLPCVL 1108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,756
Number of Sequences: 438
Number of extensions: 5377
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)