Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F09
         (1254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    75   2e-14
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    27   7.2  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   7.2  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = +3

Query: 285 EIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 461
           + E+R+LKV  ++DK+    ++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+
Sbjct: 34  DAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDAD 93

Query: 462 RLVRPKDIVQYI 497
            +    D + YI
Sbjct: 94  EITSVGDAISYI 105


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 497 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 411
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +3

Query: 81  FRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTG 260
           FR AF    R      TS    +   +L Q  +  +    I +  A  NG      + T 
Sbjct: 14  FREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTM 73

Query: 261 VQSKLSVQEIEERVLKVCKAYDKLSASQLTVD--SHFMNDLGLDSLDHVEV 407
           +  K+   + EE V +  K +DK     +TV+  +H +  LG + L   EV
Sbjct: 74  MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLG-ERLSQEEV 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,919
Number of Sequences: 5004
Number of extensions: 61343
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)