Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F09
(1254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1017 - 13229717-13229893,13231518-13231748 84 2e-16
07_01_0840 + 6831220-6831438,6831515-6831691 73 5e-13
05_04_0108 - 18046813-18046989,18047331-18047423 69 8e-12
03_05_0205 - 21965782-21965979,21969169-21969417 69 8e-12
11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983 44 2e-04
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 42 0.001
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 40 0.003
09_06_0117 - 20953136-20953261,20953621-20953743,20953859-209539... 40 0.003
03_06_0743 - 35906119-35906247,35906747-35906869,35907841-359079... 36 0.067
03_05_0982 - 29394513-29394719,29395314-29395327,29395652-293956... 29 5.8
06_02_0080 + 11518393-11518398,11520318-11520401,11520846-115209... 29 7.7
>03_02_1017 - 13229717-13229893,13231518-13231748
Length = 135
Score = 84.2 bits (199), Expect = 2e-16
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +3
Query: 267 SKLSVQEIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEI 443
S L E+ ER++KV + + K+ +++T D+HF NDLGLDSLD VEV+MA+E+EFGFEI
Sbjct: 51 SFLDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEI 110
Query: 444 PDGDAERLVRPKDIVQYIA 500
PD +A+++ K V +IA
Sbjct: 111 PDNEADKIDSIKVAVDFIA 129
>07_01_0840 + 6831220-6831438,6831515-6831691
Length = 131
Score = 72.9 bits (171), Expect = 5e-13
Identities = 33/76 (43%), Positives = 54/76 (71%)
Frame = +3
Query: 273 LSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDG 452
L+ E+ +R+L V K + K+ S+++ ++HF DLGLDSLD VEV+MA+E+EF EIPD
Sbjct: 50 LTRDEVVDRLLDVLKCHPKVDPSKVSPEAHFEKDLGLDSLDTVEVVMAIEEEFKLEIPDQ 109
Query: 453 DAERLVRPKDIVQYIA 500
+A+++ ++Y+A
Sbjct: 110 EADKIDSLPLAIEYVA 125
>05_04_0108 - 18046813-18046989,18047331-18047423
Length = 89
Score = 68.9 bits (161), Expect = 8e-12
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = +3
Query: 327 KLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIA 500
+L + +T ++HF DLGLDSLD VE++MA E+EFGFEIPD +AE++ K V ++A
Sbjct: 26 RLPDTLVTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNEAEKIDSIKTAVDFVA 83
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 68.9 bits (161), Expect = 8e-12
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = +3
Query: 228 GVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEV 407
G+ S G S + RV+++ K +D++ A ++T + F DL LDSLD VE+
Sbjct: 45 GMAASAGQEGGPPRDFSEGAVRARVVELVKKFDRIDADKVTETADFQRDLSLDSLDRVEL 104
Query: 408 IMAMEDEFGFEIPDGDAERLVRPKDIVQYI 497
+MA E EF EIPD A++L D+ +YI
Sbjct: 105 VMAFEQEFSVEIPDDKADKLSCCADVAKYI 134
>11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983
Length = 148
Score = 44.4 bits (100), Expect = 2e-04
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 297 RVLKVCKAYDKLSA-SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVR 473
+V+++ K L ++L +S F +LG DSLD VE++MA+E+EFG + + +A+ +
Sbjct: 67 KVMQIVKQQLALGEEAKLAPESQF-TELGADSLDTVEIVMALEEEFGITVEEDNAQSITT 125
Query: 474 PKDIVQYI 497
+D I
Sbjct: 126 IQDAADLI 133
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 291 EERVLKVCKAYDKLSA----SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDA 458
+E V KVC K A ++++ S F +DLG DSLD VE++M +E+EF + + A
Sbjct: 53 KETVEKVCDIVKKQLAVPEGTEVSGASKF-SDLGADSLDTVEIVMGLEEEFHISVEESSA 111
Query: 459 ERLVRPKDIVQYI 497
+ + +D I
Sbjct: 112 QSIATVEDAAALI 124
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 QEIEERVLKVCKAYDKL-SASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDA 458
+E ++V + K L + +T +S F ++LG DSLD VE++M +E+EF + + A
Sbjct: 69 KETVDKVCNIVKTQLALPEGTAVTGESKF-SELGADSLDTVEIVMGLEEEFNITVDETSA 127
Query: 459 ERLVRPKDIVQYI 497
+ + +D I
Sbjct: 128 QDIATVQDAANLI 140
>09_06_0117 -
20953136-20953261,20953621-20953743,20953859-20953957,
20955344-20955403
Length = 135
Score = 40.3 bits (90), Expect = 0.003
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +3
Query: 291 EERVLKVCKAYDKL----SASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDA 458
+E V KVC K + +T S F DLG DSLD VE++M +E+ F + + A
Sbjct: 56 KETVEKVCDIVKKQLVLPEGTDVTGASKF-TDLGADSLDTVEIVMGLEEAFKISVDESSA 114
Query: 459 ERLVRPKDIVQYI 497
+ + +D + I
Sbjct: 115 QSIATVEDAAELI 127
>03_06_0743 -
35906119-35906247,35906747-35906869,35907841-35907954,
35908092-35908148
Length = 140
Score = 35.9 bits (79), Expect = 0.067
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +3
Query: 273 LSVQEIEERVLKVCKAY-DKLSASQLTV---DSHFMNDLGLDSLDHVEVIMAMEDEFGFE 440
LS ++ + KVC+ ++L+ + T ++ F+ DLG DSLD VE++M +E+ F
Sbjct: 54 LSCSAKQDTIDKVCEIVKNQLAVDEGTAVSGETKFV-DLGADSLDTVEIVMGLEEAFQIT 112
Query: 441 IPDGDAERLVRPKD 482
+ + A+ + +D
Sbjct: 113 VDESSAQVIQTVED 126
>03_05_0982 -
29394513-29394719,29395314-29395327,29395652-29395697,
29395798-29396040
Length = 169
Score = 29.5 bits (63), Expect = 5.8
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = +3
Query: 117 TTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEE 296
+ Y T+ TC + TV +IK + K+ +++ + Q + + Q K + +E
Sbjct: 81 SAYSTANTCDVCTV---DSVISIKESQKVALAESTGLDLKQINNWFIN-QRKRHWKPSDE 136
Query: 297 RVLKVCKAYDKLSASQLTVDSHFMNDLGL 383
+ Y +A+ +D HF+ND GL
Sbjct: 137 MQFVMMDGYHPTNAAAFYMDGHFINDGGL 165
>06_02_0080 +
11518393-11518398,11520318-11520401,11520846-11520974,
11521362-11521450,11521589-11521772,11522414-11522504,
11522816-11522970,11523190-11523282,11523473-11523565,
11523715-11523795,11523867-11524016,11524134-11524229,
11524489-11524566
Length = 442
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 276 SVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEI 443
++ ++ ER+L+ CK +K + Q T D+ ++ LG L V+V A+ E G ++
Sbjct: 274 TMDQVRERILQRCKEVEKTAIEQAT-DNAILDQLG--KLVEVDVPRALFQEQGQQL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,073,422
Number of Sequences: 37544
Number of extensions: 399276
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -