Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F08
(1283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 117 4e-27
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 7.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 7.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 7.4
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 26 9.8
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 117 bits (281), Expect = 4e-27
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Frame = +1
Query: 271 VIFXALPSXRXLYXXAALNXPLITLKSXGHQXY*SYXXSXF-----NNIEFDSYIIPSNE 435
+I ALPS + LY + P +T+K+ G Q + SY + F + FDSY++P +
Sbjct: 89 LILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEED 148
Query: 436 IKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFIN 615
++ R L+VD T+ DVIHS +PSLG+K D P RLNQ + I+
Sbjct: 149 LEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSID 208
Query: 616 RPGIFFGQCSEICGANHSFIPIVIE 690
R G+F+GQCSE+CG HS +PIV++
Sbjct: 209 REGLFYGQCSELCGVLHSSMPIVVQ 233
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Frame = -3
Query: 1155 PPXXGXPXPPXXXXXXXP---PXXPXXXXXXREPXAPXXQPPS-PXXXIXXPXNPP--PP 994
PP P P P P P +P AP PPS P P PP PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 993 P 991
P
Sbjct: 204 P 204
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/81 (24%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Frame = -3
Query: 1233 GXXXXXPPPPXXXXXXXXXXXXFSXXPPXXGXPXPPXXXXXXXPPXXPXXXXXXREPXAP 1054
G PPPP S P PP P P R P
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Query: 1053 XXQPPS--PXXXIXXPXNPPP 997
PPS P P + PP
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPP 437
Score = 26.2 bits (55), Expect = 9.8
Identities = 27/116 (23%), Positives = 28/116 (24%), Gaps = 5/116 (4%)
Frame = -1
Query: 1238 PXGXPXXXPPP--PXXXXPXXPXXXXFPXXPXFXXXXXPPXXXXPXPPPXXRXXXXXXGN 1065
P P PP P P P P P P P P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPP-----PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINST 287
Query: 1064 RXPPXXNPLPRXXXFXXX---KTPPPPPXPEXXXXPXXXXTXXXXXXWVPXXPXPP 906
PP P R K PPPPP P +P P PP
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = -3
Query: 1131 PPXXXXXXXPPXXPXXXXXXREPXAPXXQPPSPXXXIXXPXNPPPP 994
PP PP P P P P +P P PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Frame = -3
Query: 1056 PXXQPPS---PXXXIXXPXNPPPPP 991
P QPPS P + NPPPPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPP 193
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 1044 PPSPXXXIXXPXNPPPPP 991
PP P P PPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 7.4
Identities = 25/113 (22%), Positives = 26/113 (23%), Gaps = 6/113 (5%)
Frame = -1
Query: 1271 PXXPXXXXXXXPXGXPXXXPP--PPXXXXPXXPXXXXFPXXPX----FXXXXXPPXXXXP 1110
P P P P PP P P P P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 1109 XPPPXXRXXXXXXGNRXPPXXNPLPRXXXFXXXKTPPPPPXPEXXXXPXXXXT 951
P P + PP P T PP P P P T
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/49 (26%), Positives = 14/49 (28%)
Frame = -3
Query: 1137 PXPPXXXXXXXPPXXPXXXXXXREPXAPXXQPPSPXXXIXXPXNPPPPP 991
P PP P P PP P + PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Frame = -3
Query: 1137 PXPPXXXXXXXPPXXPXXXXXXRE-PXAPXXQPPSPXXXIXXPXNPPPPP 991
P PP P P P PP P P PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 105 LFCSRSHMSCXFMSXVXFSXALFIIRFFFHQSVSSLFLSQ----AKSLHVICT 251
L C+R+H+ + + V + +F +F++ +S L +K+L CT
Sbjct: 191 LLCTRTHLPSKYFTSVSWMTQMFYYTTYFYEMMSGSALRPIDLVSKNLTTFCT 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,232
Number of Sequences: 5004
Number of extensions: 50907
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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