Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F07
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    29   1.0  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    27   5.5  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    26   9.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   9.5  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   9.5  

>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 874 FSGSICFTKALRLVLGLFLFFHNNG 800
           FS S+  T  + +++GL++ FHN+G
Sbjct: 4   FSTSLWTTTVMSIIVGLYMLFHNSG 28


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 183 QNGNRTKRHTIYRSVFSVNKSSPMKLSY*KY*PFVT 76
           Q+ +RT+  T+YR+  +  KS P  LS+    P VT
Sbjct: 234 QSSSRTRLSTVYRTKLASGKSIPRPLSHKLTRPRVT 269


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 687 VIAYSVKPNGFSPLDIFLTNSN 752
           VIA   +PN  +PLD+F+   N
Sbjct: 104 VIAAPARPNAIAPLDVFVPAGN 125


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 449 HIQLEFKTWKKIYHNNKKFFSYLNEVSL 366
           +++ +F  WK  Y+ +K  FSY +E +L
Sbjct: 488 NVEKDFIQWKDDYYRSKVGFSYYDEEAL 515


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = -1

Query: 337  VDADTKCP------FTPLSH**QLLYQNSSSI*TQIILNSRSDNAIDIDKVNALPASS 182
            V ADT  P      FT LS     LY +S ++    I+N++S  A+ + +VN+LP +S
Sbjct: 912  VKADTAVPGVYHYEFTKLS---DSLYSDSDAV---TIVNNQSYQAVVLQRVNSLPKAS 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,098,377
Number of Sequences: 5004
Number of extensions: 78636
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)