Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F07
         (1261 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87969-1|BAA13522.1|  337|Homo sapiens CMP-sialic acid transport...    31   6.7  
BC017807-1|AAH17807.1|  337|Homo sapiens solute carrier family 3...    31   6.7  
AL049697-6|CAB76857.1|  337|Homo sapiens solute carrier family 3...    31   6.7  
AJ851889-1|CAH65469.1|  189|Homo sapiens CMP-sialic acid transpo...    31   6.7  
AJ851888-1|CAH65468.1|  278|Homo sapiens CMP-sialic acid transpo...    31   6.7  
AJ810303-1|CAH17781.1|  227|Homo sapiens mutated CMP-sialic acid...    31   6.7  
AJ810302-1|CAH17780.1|  108|Homo sapiens mutated CMP-sialic acid...    31   6.7  

>D87969-1|BAA13522.1|  337|Homo sapiens CMP-sialic acid transporter
           protein.
          Length = 337

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


>BC017807-1|AAH17807.1|  337|Homo sapiens solute carrier family 35
           (CMP-sialic acid transporter), member A1 protein.
          Length = 337

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


>AL049697-6|CAB76857.1|  337|Homo sapiens solute carrier family 35
           (CMP-sialic acid transporter), member A1 protein.
          Length = 337

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


>AJ851889-1|CAH65469.1|  189|Homo sapiens CMP-sialic acid
           transporter protein.
          Length = 189

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


>AJ851888-1|CAH65468.1|  278|Homo sapiens CMP-sialic acid
           transporter protein.
          Length = 278

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


>AJ810303-1|CAH17781.1|  227|Homo sapiens mutated CMP-sialic acid
           transporter A1 protein.
          Length = 227

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


>AJ810302-1|CAH17780.1|  108|Homo sapiens mutated CMP-sialic acid
           transporter A1 protein.
          Length = 108

 Score = 31.5 bits (68), Expect = 6.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 880 YFFSGSICFTKALRLVLGLFLFFHNNGRLGRAKA-MSKPLICSLFELVK 737
           YF + ++C T+ ++L+L + +     G LGR KA + + ++ S  EL+K
Sbjct: 42  YFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLK 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,532,054
Number of Sequences: 237096
Number of extensions: 2415504
Number of successful extensions: 3410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18000117210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)