Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F07
         (1261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.60 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.60 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   7.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   7.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   7.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   9.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 952 YNDRFNVYKLRHVXGDAFLNCYYYY 878
           YND    YKL +   D  LN YYYY
Sbjct: 214 YNDP--EYKLDYFMEDVELNAYYYY 236


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 952 YNDRFNVYKLRHVXGDAFLNCYYYY 878
           YND    YKL +   D  LN YYYY
Sbjct: 214 YNDP--EYKLDYFMEDVELNAYYYY 236


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 673 VAYFLSNTFFHIH 635
           VAYF+  TFF IH
Sbjct: 472 VAYFMFLTFFFIH 484


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 673 VAYFLSNTFFHIH 635
           VAYF+  TFF IH
Sbjct: 458 VAYFMFLTFFFIH 470


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 673 VAYFLSNTFFHIH 635
           VAYF+  TFF IH
Sbjct: 492 VAYFMFLTFFFIH 504


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 673 VAYFLSNTFFHIH 635
           VAYF+  TFF IH
Sbjct: 441 VAYFMFLTFFFIH 453


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 342 ELLMLIPNVLSPLSRTNDNYYIKIRLQFKRRLSL 241
           +LL     ++ P+S  ND   +K+ L+  + + L
Sbjct: 27  DLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,920
Number of Sequences: 438
Number of extensions: 5055
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)