Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F06
(1268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 36 0.016
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 33 0.063
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 32 0.19
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 31 0.34
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 29 1.0
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 9.6
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 9.6
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 35.5 bits (78), Expect = 0.016
Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 10/167 (5%)
Frame = +1
Query: 436 LDCLLKCATLK---QVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISAT-------ETVR 585
+D ++ T+K ++ ++AE+ Q L + Q L+ +NYN + + +
Sbjct: 33 MDAFVRDLTMKPYAELEKRKAELHAQKLKLVQKRQQLLRDNYNVLVDYARNQDAFYQLLE 92
Query: 586 KMRSDFKIMQEEMNKLSENINKITTFSSQISENLQGSGNNVRRLCGTRXXXXXXXXXXXX 765
R DFK + N+L E + + F + ISE+ + + +L
Sbjct: 93 NSRHDFKELVLHTNQLYEPVKRSQNFLTSISEHYRDA-----KL--MHQVQPQLSSILEL 145
Query: 766 PSQLNKAIAEGRYSDAVQDYSHAQRVLQKYGNQPSFQSIQTECSEII 906
P +N I +S+ ++ + A R+ ++G Q + T+ ++
Sbjct: 146 PELMNACIERNYFSETLEFQALAYRLKDRFGTNSIIQELITQVETLV 192
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.5 bits (73), Expect = 0.063
Identities = 21/108 (19%), Positives = 47/108 (43%)
Frame = +1
Query: 394 PLDIDSSSFSPDVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISAT 573
P D+ +F YL+ +L+ + + + +++ ++ ++ Y+N N+++ +
Sbjct: 61 PKFFDNQNFDAQSYLNDVLQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFIS 120
Query: 574 ETVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQGSGNNVRRL 717
V M SDFK Q + L +I + + + V+RL
Sbjct: 121 GEVESMTSDFKKFQSLLKTLETDIEGLNLVDHTHDPSDESIKQTVQRL 168
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 520 SEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQ 690
SE+ + E NK ET ++ + F+ ++ + E+INK+ +++ NL+
Sbjct: 562 SELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDLRRFHESINKLQDREKELTSNLE 618
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 31.1 bits (67), Expect = 0.34
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 427 DVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFK 606
D + DC+ K L++ +D ++ ++ L E+Q + N+ A + V +++S
Sbjct: 1274 DTFYDCIQKIEELEKQIDVARDVAEDTKSLGKELQNKI----NEKNLAEQKVEELQSQSF 1329
Query: 607 IMQEEMNKLSENINK-ITTFSSQISENLQGSGNNV 708
+E++ L + K I + + L GSG+++
Sbjct: 1330 TKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDL 1364
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 445 LLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDF-KIMQEE 621
+ + ++ Q + E + Q + E+Q V NY FI A+E + +R++ K++Q
Sbjct: 17 IFRTHSIAQTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLEKVLQNS 76
Query: 622 MNKLS-ENINKITTFSSQISEN 684
S ++ K+ S +S+N
Sbjct: 77 YEFQSMVSLPKVDRVSKFLSDN 98
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 9.6
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +1
Query: 463 LKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSEN 642
+KQ+ E +Q Q L+ + +L Y+ N+ IS +E F+ M E +L N
Sbjct: 333 MKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISE--------FEKMVSEREQLDRN 384
Query: 643 INKITTFSSQISE 681
+N I S+ISE
Sbjct: 385 LNMI---GSKISE 394
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +1
Query: 460 TLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSE 639
TL ++D + + FLQ + L E+Y K +S + + + I+ E+++ + E
Sbjct: 1087 TLYSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILE 1146
Query: 640 NINKI 654
+ KI
Sbjct: 1147 ALRKI 1151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,662,310
Number of Sequences: 5004
Number of extensions: 64318
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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