Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F06
(1268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 87 2e-17
12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782... 42 0.001
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 36 0.051
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 31 1.9
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 3.4
05_05_0317 + 24039343-24042717 30 4.5
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 29 7.8
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 87.4 bits (207), Expect = 2e-17
Identities = 44/150 (29%), Positives = 83/150 (55%)
Frame = +1
Query: 457 ATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLS 636
+ L+ ++ + ++ + + L +++Q LVYENYNKFISAT+T+++M+++ M+ M +L
Sbjct: 14 SNLEALLQRHVKMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKTNIVGMEANMEQLL 73
Query: 637 ENINKITTFSSQISENLQGSGNNVRRLCGTRXXXXXXXXXXXXPSQLNKAIAEGRYSDAV 816
I + + S ++ +L N+ +L TR P++LNK I Y+DAV
Sbjct: 74 SKITSVQSRSDTVNTSLFDKRENIEKLHRTRNLLRKVQFIYDLPTRLNKCIKTEAYADAV 133
Query: 817 QDYSHAQRVLQKYGNQPSFQSIQTECSEII 906
+ ++ A+ + + YG+ SF + E I
Sbjct: 134 RFFTGAKPIFEAYGD-TSFHDCKKASEEAI 162
>12_02_0645 +
21475126-21475293,21475386-21475538,21478101-21478249,
21478449-21478526,21478604-21478697,21478920-21478994,
21479341-21479637,21479722-21479789,21479876-21479930,
21480137-21480275,21480439-21480623,21480748-21481119
Length = 610
Score = 41.9 bits (94), Expect = 0.001
Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Frame = +1
Query: 475 MDKEAEIV-TQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINK 651
+ KE E++ ++ ++ +MQ + ENY FI+A+E + +R+ + + L E I
Sbjct: 54 LHKEPELLRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFDRHLEALIEEIPN 113
Query: 652 ITTFSSQISENLQGSGNNVRRLCGT-RXXXXXXXXXXXXPSQLNKAIAEGRYSDAVQDYS 828
+T+ ++ E+ Q R+L T P ++ I G Y +A+ +
Sbjct: 114 LTSGCTEFVESAQQILEE-RKLNQTLLANHSTLLDLLEIPQLMDTCIRNGNYDEALDLEA 172
Query: 829 HAQRVLQKYGNQPSFQSIQTECSEII 906
++ + + + P Q + E + I
Sbjct: 173 FVSKISKLHPDLPVIQGLAVEVKKTI 198
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 36.3 bits (80), Expect = 0.051
Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Frame = +1
Query: 409 SSSFSPDVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRK 588
S +F P V+L + K + + + T + + + LV EN++ F+S T+
Sbjct: 227 SPNFDPKVFLSWVHKDTSAADLESGALTLKTDLKGRTQQKKQLVKENFDCFVSCKTTIDD 286
Query: 589 MRSDFKIMQEEMN-----KLSENINKITTFSSQISENLQGSGNNVRRLCGTRXXXXXXXX 753
+ S + ++E+ L KI+ +++ E L ++ +
Sbjct: 287 IESKLRQIEEDPEGAGTAHLYSVTQKISGVANRAFEPLFERQAQAEKIRSVQGMLQRFRT 346
Query: 754 XXXXPSQLNKAIAEGRYSDAVQDYSHAQRVL 846
PS + I +G Y AV++Y A+ ++
Sbjct: 347 LFNLPSAIRGNIRKGEYDLAVREYQKAKSIV 377
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 31.1 bits (67), Expect = 1.9
Identities = 26/146 (17%), Positives = 54/146 (36%)
Frame = +1
Query: 409 SSSFSPDVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRK 588
+ +F PD Y+ K++ + + + EM+ VY NY FI ++ +
Sbjct: 42 TDNFDPDAYVQSKCHAMNEKEIRHLCSYLQDLKKASSEEMRRSVYANYAAFIRTSKEISD 101
Query: 589 MRSDFKIMQEEMNKLSENINKITTFSSQISENLQGSGNNVRRLCGTRXXXXXXXXXXXXP 768
+ + ++ ++ S I ++ S G+ + P
Sbjct: 102 LERELLSVRNLLSTQSALIRGLSEGVHIDSLTTGSEGSAEEGTDEDQEPSEIQNWCTDFP 161
Query: 769 SQLNKAIAEGRYSDAVQDYSHAQRVL 846
L+ +AE R +A+ A+RV+
Sbjct: 162 EMLDVLLAERRVDEALDALDEAERVV 187
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.3 bits (65), Expect = 3.4
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +1
Query: 484 EAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINKITTF 663
E EI +S+ + S +L E K + A ++ M S + QEE+N+L I K+ F
Sbjct: 610 ELEITQKSESMDSLTLSLKDET-EKRVQAETSLMSMESMYSQSQEEVNRLHLEIEKL-NF 667
Query: 664 SSQISENLQGSGNN 705
ENL N+
Sbjct: 668 KLNELENLSSELNS 681
>05_05_0317 + 24039343-24042717
Length = 1124
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 460 TLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSE 639
TL Q++ + + ++ Q + V EN+++ ET+ + S F + MN L E
Sbjct: 213 TLTQLVYNDPRV---KEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQE 269
Query: 640 NINK 651
+++K
Sbjct: 270 DLSK 273
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 349 NKVHNMEEAKAVKENPLDIDSSSFSPDVYLDCLLKCATLKQV 474
NK+ +E +K LD+ +S S LD L C TL+ +
Sbjct: 425 NKISEVEGLHRLKLKVLDLHGNSLSSSKCLDQLANCGTLQSI 466
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,285,915
Number of Sequences: 37544
Number of extensions: 358906
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -