Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F06
(1268 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 82 9e-16
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 82 9e-16
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 31 1.3
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 31 1.3
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 31 1.7
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 31 1.7
U64833-7|AAB04819.1| 254|Caenorhabditis elegans Hypothetical pr... 30 3.0
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 30 3.0
AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical ... 30 4.0
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 29 7.0
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 81.8 bits (193), Expect = 9e-16
Identities = 46/174 (26%), Positives = 88/174 (50%)
Frame = +1
Query: 397 LDIDSSSFSPDVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATE 576
LD+ F + ++ LL+ +L ++ +E E+V+ + L S++ +VYENYNKF++AT
Sbjct: 5 LDVTKPDFDVEAFVVKLLREKSLDGLVKEEEEMVSAVRRLDSDVHQIVYENYNKFLTATN 64
Query: 577 TVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQGSGNNVRRLCGTRXXXXXXXXX 756
TVRK++ +F + EM LS +++ I+T + L +++ +L +
Sbjct: 65 TVRKIQDEFTQLDSEMKSLSRSMSTISTLIGNLDGVLGEKRDDILQLGSSYKVVNSLKHI 124
Query: 757 XXXPSQLNKAIAEGRYSDAVQDYSHAQRVLQKYGNQPSFQSIQTECSEIIFGTE 918
P L E Y + ++ + A+ L +Y + P+ Q + + +I TE
Sbjct: 125 FDLPHVLRSEFDERNYGEVLRMFKLAEESLSQYKDVPTVQLVLQKSKKIYDMTE 178
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 81.8 bits (193), Expect = 9e-16
Identities = 46/174 (26%), Positives = 88/174 (50%)
Frame = +1
Query: 397 LDIDSSSFSPDVYLDCLLKCATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATE 576
LD+ F + ++ LL+ +L ++ +E E+V+ + L S++ +VYENYNKF++AT
Sbjct: 5 LDVTKPDFDVEAFVVKLLREKSLDGLVKEEEEMVSAVRRLDSDVHQIVYENYNKFLTATN 64
Query: 577 TVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQGSGNNVRRLCGTRXXXXXXXXX 756
TVRK++ +F + EM LS +++ I+T + L +++ +L +
Sbjct: 65 TVRKIQDEFTQLDSEMKSLSRSMSTISTLIGNLDGVLGEKRDDILQLGSSYKVVNSLKHI 124
Query: 757 XXXPSQLNKAIAEGRYSDAVQDYSHAQRVLQKYGNQPSFQSIQTECSEIIFGTE 918
P L E Y + ++ + A+ L +Y + P+ Q + + +I TE
Sbjct: 125 FDLPHVLRSEFDERNYGEVLRMFKLAEESLSQYKDVPTVQLVLQKSKKIYDMTE 178
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 571 TETVRKMRSDFKIMQEEMNKLSENINKITTFSSQ 672
++T K+R+D KIM+E++ + N+ K+ T Q
Sbjct: 576 SKTFHKLRNDKKIMEEDLRDVQLNVQKLETMQHQ 609
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 571 TETVRKMRSDFKIMQEEMNKLSENINKITTFSSQ 672
++T K+R+D KIM+E++ + N+ K+ T Q
Sbjct: 562 SKTFHKLRNDKKIMEEDLRDVQLNVQKLETMQHQ 595
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 571 TETVRKMRSDFKIMQEEMNKLSENINKITTFSSQ 672
++T K+R+D KIM+E++ + N+ K+ T Q
Sbjct: 562 SKTFHKLRNDKKIMEEDLRDVQLNVQKLETMQHQ 595
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 514 LQSEMQTLVYENYNKFIS-ATETVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQ 690
++ E Q +V EN K I ETV++++ + EE+ + +E + ++ + L
Sbjct: 283 MEREKQHIVNENLEKKIGEGEETVKQLQISYDAQSEELKQRNERVVQLEARIEENVFELS 342
Query: 691 GSGNNVRRL 717
+ NV+RL
Sbjct: 343 ENKQNVKRL 351
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 514 LQSEMQTLVYENYNKFIS-ATETVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQ 690
++ E Q +V EN K I ETV++++ + EE+ + +E + ++ + L
Sbjct: 285 MEREKQHIVNENLEKKIGEGEETVKQLQISYDAQSEELKQRNERVVQLEARIEENVFELS 344
Query: 691 GSGNNVRRL 717
+ NV+RL
Sbjct: 345 ENKQNVKRL 353
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 514 LQSEMQTLVYENYNKFIS-ATETVRKMRSDFKIMQEEMNKLSENINKITTFSSQISENLQ 690
++ E Q +V EN K I ETV++++ + EE+ + +E + ++ + L
Sbjct: 285 MEREKQHIVNENLEKKIGEGEETVKQLQISYDAQSEELKQRNERVVQLEARIEENVFELS 344
Query: 691 GSGNNVRRL 717
+ NV+RL
Sbjct: 345 ENKQNVKRL 353
>U64833-7|AAB04819.1| 254|Caenorhabditis elegans Hypothetical
protein B0507.9 protein.
Length = 254
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 469 QVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENIN 648
Q+ D I + L SE Q + +NY KF+ + + M + ++ E+ +++ I
Sbjct: 176 QISDFNKVIPNFKRILNSENQEIDPDNYEKFVDMKKRLFAMVNCLHLISEKRGEMNRLIE 235
Query: 649 KITTFSSQISENLQ 690
+ S +NLQ
Sbjct: 236 EKMNLSMPQFQNLQ 249
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +1
Query: 775 LNKAIAEGRYSDAVQ---DYSHAQRVLQKY--GNQPSFQSIQTECSEIIFGTEED 924
L+K +A+ ++ ++ YS R L+++ N P F S++T+C EI+ EED
Sbjct: 424 LDKKLAQRKHFPSINWLISYSEYMRALEEFYEKNYPEFVSLRTKCKEIL-QEEED 477
>AF016683-9|AAB66197.1| 299|Caenorhabditis elegans Hypothetical
protein K09F6.7 protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.0
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 451 KC-ATLKQVMDKEAEIVTQSQFLQSEMQTLVYENYNKFISATET-VRKMRSDFKIMQEEM 624
KC +TL + + ++ + + + +Q + NK I + VRK+R +E
Sbjct: 121 KCVSTLSHLHHTKKSLIAEMEKSRELLQGRI-NRLNKTIGEIDQDVRKLRMSQIAFREGG 179
Query: 625 NKLSENINKITTFSSQISE 681
N + N+ITTF S+I E
Sbjct: 180 NNYQQKANEITTFYSRIRE 198
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 520 SEMQTLVYENYNKFISATETVRKMRSDFKIMQEEMNKLSENINKITT 660
S + +++Y+ N+F +T+RK S+ K + ++ + IN + +
Sbjct: 207 STLTSVIYQALNQFSEQLQTIRKYVSNTKASESDLKYIQRLINSLNS 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,173,810
Number of Sequences: 27780
Number of extensions: 354998
Number of successful extensions: 1027
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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