Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F04
         (1271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    50   5e-06
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    45   1e-04
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    35   0.11 
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    33   0.57 
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   7.0  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 38/144 (26%), Positives = 65/144 (45%)
 Frame = +1

Query: 442 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 621
           ++ L  SY YL  + YF+         AK F++ SD+  E    L++    RGG++    
Sbjct: 21  NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRVVLQD 80

Query: 622 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 801
               + D       E G  + A   AL  +K   E +  +H     +    +DA +T +I
Sbjct: 81  IQKPEND-------EWGTALKAFEAALALEKFNNESLLKLHSTAGNH----NDAHLTDFI 129

Query: 802 EEEFVSQQADTIRSLAGHTSDLKR 873
           EE+++ +Q  +I   A   ++LKR
Sbjct: 130 EEKYLDEQVKSINEFARMVANLKR 153


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 35/141 (24%), Positives = 65/141 (46%)
 Frame = +1

Query: 451 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 630
           L  SY YL  +++F+         AK F++ SD+       L++    RGG++  +    
Sbjct: 24  LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNI 81

Query: 631 LKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEE 810
            K +K      E G  + A   AL  ++     +  +H    + +D    A +T YI+E+
Sbjct: 82  QKPEKD-----EWGTVLEAFEAALALERANNASLLKLHGIAEQRND----AHLTNYIQEK 132

Query: 811 FVSQQADTIRSLAGHTSDLKR 873
           ++ +Q  +I   A H +++KR
Sbjct: 133 YLEEQVHSINEFARHIANIKR 153


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 35.1 bits (77), Expect = 0.11
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 745 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 900
           + V K  ++LH     Q  EE F +Q   TIR  A   +DLK+F  +    D
Sbjct: 41  KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +1

Query: 610 DFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEI 789
           D S+HTT      S  TVE  H++ ++A ++ T  +  E + FI  +  + + L+  A  
Sbjct: 627 DSSAHTT----PISTRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALK 682

Query: 790 TQYIEEEFVSQQ-ADTIRSLAGHTSDLKRFITENNG 894
           T +   E  S++ A+ IRS     + +   +++ +G
Sbjct: 683 TGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHG 718


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 315 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 410
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,474,932
Number of Sequences: 27780
Number of extensions: 445608
Number of successful extensions: 1289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)