Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F03
         (1255 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.98 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    31   1.7  
U97194-4|AAP13781.1|  521|Caenorhabditis elegans Cyclin e protei...    29   6.9  
U97194-3|AAK68235.1|  524|Caenorhabditis elegans Cyclin e protei...    29   6.9  
AF520616-1|AAM78547.1|  524|Caenorhabditis elegans cyclin E prot...    29   6.9  
AF058331-1|AAC63505.1|  524|Caenorhabditis elegans cyclin E prot...    29   6.9  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 582 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 704
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = -3

Query: 875 NPVXQWLLPVAISRV-LPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSY 699
           NP+ +   P A+  V   G++    +R RR     +    H  AW+ R  P    ++ + 
Sbjct: 59  NPLGEQRTPQAVRSVPKDGYSL---FRYRRMVFGAKDQLKHDKAWNNRSLPQKSRWNQAS 115

Query: 698 EKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 585
            K  ++ K E + G     G+E+       +G+T   F
Sbjct: 116 VKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


>U97194-4|AAP13781.1|  521|Caenorhabditis elegans Cyclin e protein 1,
            isoform b protein.
          Length = 521

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 1087 DFLNXFFXVFXXXTKTTVPAVVFCRIRXTNFFXKVTGFSRAQIPNTVXXV*P 932
            DFL      F    +T   AV+F     T    K TGF +AQ+   +  V P
Sbjct: 406  DFLLFEIDSFTFSYRTIAAAVLFVNYEPTCAVEKATGFMQAQLEKVIEYVEP 457


>U97194-3|AAK68235.1|  524|Caenorhabditis elegans Cyclin e protein 1,
            isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 1087 DFLNXFFXVFXXXTKTTVPAVVFCRIRXTNFFXKVTGFSRAQIPNTVXXV*P 932
            DFL      F    +T   AV+F     T    K TGF +AQ+   +  V P
Sbjct: 409  DFLLFEIDSFTFSYRTIAAAVLFVNYEPTCAVEKATGFMQAQLEKVIEYVEP 460


>AF520616-1|AAM78547.1|  524|Caenorhabditis elegans cyclin E protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 1087 DFLNXFFXVFXXXTKTTVPAVVFCRIRXTNFFXKVTGFSRAQIPNTVXXV*P 932
            DFL      F    +T   AV+F     T    K TGF +AQ+   +  V P
Sbjct: 409  DFLLFEIDSFTFSYRTIAAAVLFVNYEPTCAVEKATGFMQAQLEKVIEYVEP 460


>AF058331-1|AAC63505.1|  524|Caenorhabditis elegans cyclin E protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 1087 DFLNXFFXVFXXXTKTTVPAVVFCRIRXTNFFXKVTGFSRAQIPNTVXXV*P 932
            DFL      F    +T   AV+F     T    K TGF +AQ+   +  V P
Sbjct: 409  DFLLFEIDSFTFSYRTIAAAVLFVNYEPTCAVEKATGFMQAQLEKVIEYVEP 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,153,514
Number of Sequences: 27780
Number of extensions: 492902
Number of successful extensions: 1275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3485108972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)