Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E23
         (1275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   239   4e-63
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   130   2e-30
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   5.3  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    29   9.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   9.3  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  239 bits (584), Expect = 4e-63
 Identities = 113/154 (73%), Positives = 130/154 (84%)
 Frame = +3

Query: 114 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 293
           KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ
Sbjct: 15  KSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQ 74

Query: 294 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 473
            KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRA
Sbjct: 75  TKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRA 134

Query: 474 HGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 575
           HGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 135 HGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  130 bits (315), Expect = 2e-30
 Identities = 81/154 (52%), Positives = 95/154 (61%)
 Frame = +3

Query: 114 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 293
           KSCKARGS+LRVHFKNT+E A     M LR               +P RR    +    +
Sbjct: 15  KSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRAQAFLNHVKE 55

Query: 294 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 473
            K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRA
Sbjct: 56  HKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRA 106

Query: 474 HGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 575
           HGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 107 HGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 618 FDAQAFSWKAFSSLEHHQ*GLPWRQHLRVR*DILRCGRETTCRG 487
           F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 344 FGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 338 GFLGPATLCCAKLLCLS--TATNAAVEATEWNTLFLFDHVFEVTNSTTERHLPDCHSGLI 165
           G  G  T C     C S  T  N   +++  N ++  +  +  + ST  R+  DC+SG +
Sbjct: 81  GTTGSGTYCTTSYSCRSGETCMNNRCQSSYSNNMYNSNSQYSNSGSTC-RYSTDCYSGQM 139

Query: 164 C 162
           C
Sbjct: 140 C 140


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 324 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 485
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 486 NPYMSSPCHIEVCLSER 536
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,019
Number of Sequences: 27780
Number of extensions: 308904
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)