Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E22
         (1230 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    51   5e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    42   0.025
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.53 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    37   0.93 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    35   3.7  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   4.9  
UniRef50_Q7RI23 Cluster: ADA2-like protein; n=6; Plasmodium (Vin...    34   6.5  
UniRef50_A0C4M0 Cluster: Chromosome undetermined scaffold_15, wh...    34   6.5  
UniRef50_P05143 Cluster: Proline-rich protein 2 precursor; n=10;...    34   6.5  
UniRef50_Q4XF85 Cluster: Cyclin related protein, putative; n=1; ...    34   8.6  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 51.2 bits (117), Expect = 5e-05
 Identities = 29/55 (52%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 717 CINESANARGEAVXVLGALPXPRSLTRCARSXGCGERYQL-PQRR*YGYPQNXGI 878
           CI + A AR EAV VL ALP  RS TRC RS GCG         R YG PQ  G+
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGM 320


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 42.3 bits (95), Expect = 0.025
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +3

Query: 765 GALPXPRSLTRCARSXGCGERYQL 836
           G +P PRSLTR ARS GCGERY+L
Sbjct: 34  GDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 37.9 bits (84), Expect = 0.53
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 715 SALMNRPTRGERRXAYW 765
           +ALMNRPTRGERR AYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.1 bits (82), Expect = 0.93
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 769 APNTXTASPRALADSLMQ 716
           APNT TASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 35.1 bits (77), Expect = 3.7
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = +2

Query: 833 APSKAVIRXSXESGDTAGKNM 895
           A SKAVIR S ESGD AGKNM
Sbjct: 39  AHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 34.7 bits (76), Expect = 4.9
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +1

Query: 520 DPDMIRXXDEXGQXTTRMQ 576
           DPDMIR  DE GQ TTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q7RI23 Cluster: ADA2-like protein; n=6; Plasmodium
           (Vinckeia)|Rep: ADA2-like protein - Plasmodium yoelii
           yoelii
          Length = 2228

 Score = 34.3 bits (75), Expect = 6.5
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -1

Query: 306 IYVNKILNYNCQLFILNLSLNFIYVFNHVNKFRRIIYVSFNS*LSKMVLKYVLY 145
           +Y+ K++ Y    FILN ++  + + + +NKFR    +   + +S   + Y++Y
Sbjct: 172 VYIKKMIKYQEFSFILNKNIKLVIISDEINKFRMFKCIFEINKISNKFIFYLIY 225


>UniRef50_A0C4M0 Cluster: Chromosome undetermined scaffold_15, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_15, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3363

 Score = 34.3 bits (75), Expect = 6.5
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -1

Query: 351  LQDPRSD-CGR*TQLFIYVNKILNYNCQLFILNLSLNFIYVFNHVNKFRRIIYVSFNS 181
            LQ  RS  C    + F  +N    YNC++F   LSL  +++ NHV +F++ IYV  N+
Sbjct: 1204 LQSERSQQCNYQNKCFWDINA---YNCKVF---LSLESVFIKNHVREFQKQIYVLKNT 1255


>UniRef50_P05143 Cluster: Proline-rich protein 2 precursor; n=10;
            Deuterostomia|Rep: Proline-rich protein 2 precursor - Mus
            musculus (Mouse)
          Length = 317

 Score = 34.3 bits (75), Expect = 6.5
 Identities = 31/114 (27%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
 Frame = +3

Query: 861  PQNXGIPXERTCEXXAAXGXNRKRPXXXRXP*ARPPDEXXKXTPSXXGXTRRXXXSRXXP 1040
            P   G P  R  +     G  + RP     P   P     +  P   G   R       P
Sbjct: 52   PPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 111

Query: 1041 GXPX-GPPVRPXXXGXGXLXPXXXGXPXPXXXXXR--GXXXPXGGXXPXXPXGP 1193
            G P   PP  P   G G       G P P     R      P GG  P  P GP
Sbjct: 112  GGPQPRPPQGPPPPG-GPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQGP 164



 Score = 33.9 bits (74), Expect = 8.6
 Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 1/120 (0%)
 Frame = +3

Query: 837  PQRR*YGYPQNXGIPXERTCEXXAAXGXNRKRPXXXRXP*ARPPDEXXKXTPSXXGXTRR 1016
            PQ+R    P   G P  R  +        + RP     P A P     +  P   G  +R
Sbjct: 142  PQQRPPQGPPPPGGPQPRPPQGPPPPAGPQPRPPQGPPPPAGPHLRPTQGPPPTGGPQQR 201

Query: 1017 XXXSRXXPGXPX-GPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGP 1193
               S   PG P   PP  P   G     P     P            P GG     P GP
Sbjct: 202  YPQSPPPPGGPQPRPPQGPPPPGGPHPRPTQGPPPTGPQPRPTQGPPPTGGPQQRPPQGP 261


>UniRef50_Q4XF85 Cluster: Cyclin related protein, putative; n=1;
           Plasmodium chabaudi|Rep: Cyclin related protein,
           putative - Plasmodium chabaudi
          Length = 176

 Score = 33.9 bits (74), Expect = 8.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 312 LFIYVNKILNYNCQLFILNLSLNFIYVFNHVNKFRRIIYVSFNS*LSKMVLKYVLYTSHL 133
           L+++VN  ++ NC++ I++    +I++  + NKF+ I    F   +  +  KY   T   
Sbjct: 10  LYVFVNVDMHNNCKIKIISYKYIYIFLIINANKFKNIFPSPFVVQIKNLNYKYATNTEED 69

Query: 132 K 130
           K
Sbjct: 70  K 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 803,860,290
Number of Sequences: 1657284
Number of extensions: 12497129
Number of successful extensions: 19513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19278
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 123910648254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)