Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_E22
(1230 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.55
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 3.9
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 8.9
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical protein
F54B11.2 protein.
Length = 304
Score = 33.5 bits (73), Expect = 0.31
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P G P P G G P P P G P G P P GP P
Sbjct: 123 PGKP-GAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDGPAGPAGPDGEAGSP 180
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical protein
H06A10.2 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.55
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P G P P G G P P P G P G P P GP P
Sbjct: 124 PGKP-GAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDGPAGPAGPDGEAGSP 181
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXG-GXXPXXPXGP 1193
PG P G P P G G P P P G P G P P GP
Sbjct: 134 PGKP-GAPGNPGASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGP 185
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical protein
C50F7.5 protein.
Length = 309
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +2
Query: 959 PXPGRAXKXDXQSXGXNPTGXXIPXXP-RXXPGXPXPTXRXXXRPPXP 1099
P PG D S P P P R PG P P R PP P
Sbjct: 227 PSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGP 274
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P GP G P G P P GG P P GP P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P G P P G G P P G P G P P GP P
Sbjct: 119 PGKP-GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSP 176
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P GP G P G P P GG P P GP P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P G P P G G P P G P G P P GP P
Sbjct: 119 PGKP-GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSP 176
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P GP G P G P P GG P P GP P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P G P P G G P P G P G P P GP P
Sbjct: 119 PGKP-GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSP 176
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P GP G P G P P GG P P GP P
Sbjct: 200 PGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 1038 PGXPXGPPVRPXXXGXGXLXPXXXGXPXPXXXXXRGXXXPXGGXXPXXPXGPXXXXXXP 1214
PG P G P P G G P P G P G P P GP P
Sbjct: 119 PGKP-GAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSP 176
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 1087 PXPXXXGRTGGPXGXPGXXRDXXXRRVXPXXLG 989
P P GRT GP G PG R P +G
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 331
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 8.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 1087 PXPXXXGRTGGPXGXPGXXRDXXXRRVXPXXLG 989
P P GRT GP G PG R P +G
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,151
Number of Sequences: 27780
Number of extensions: 316177
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3401633308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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