Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_E18
(1313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 35 0.12
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.12
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.38
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 31 1.5
02_04_0400 - 22608519-22608844,22609044-22609122 31 1.5
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 31 2.0
01_05_0433 - 22094784-22095659 31 2.0
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 30 3.5
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 30 3.5
12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204... 29 6.2
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 29 8.1
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.1 bits (77), Expect = 0.12
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 209 GGGGXXPPXXGGXXAPPXPPPXXXGG 286
GGGG PP GG PP PP GG
Sbjct: 102 GGGGARPPGGGGGGGPPSLPPGAGGG 127
Score = 34.7 bits (76), Expect = 0.16
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 210 GGXXXXPPXGGGXGPPXXPPXXXGGG 287
GG P GGG GPP PP GGG
Sbjct: 103 GGGARPPGGGGGGGPPSLPPGAGGGG 128
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.12
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 286 PPPXXWGGXXGGPXPPPXGGXXXXPP 209
PPP GG GGP PPP G PP
Sbjct: 365 PPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 33.9 bits (74), Expect = 0.29
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = +2
Query: 695 PPPXKKKKKXXPXGGGGXPXXKKKXXGXPPKKPPGGXXXXKXXKKKKTPPXXPXG 859
PPP K P G P K PP PPGG KK PP P G
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG-------KKGGPPPPPPKG 384
Score = 31.1 bits (67), Expect = 2.0
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = +1
Query: 748 PPXXKKXXGXXPKKTPRGPXXXKXXXKKKNPPXXPXGXGGXXXKXPXGXFXXGGGPPXKG 927
PP P P+GP K PP P G P G PP KG
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPA-KGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
Query: 928 GXXKKP 945
G + P
Sbjct: 385 GASRPP 390
Score = 29.5 bits (63), Expect = 6.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 929 PPFXGGPPPXXKXPXGXXKXXPPXPXGXXGG 837
PP G PPP P G PP P G GG
Sbjct: 348 PPAKGPPPPPP--PKGPSPPPPPPPGGKKGG 376
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.5 bits (73), Expect = 0.38
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 182 PPXXKXXXXGGGGXXPPXXGGXXAPPXPPPXXXGG 286
PP GG PP G APP PPP GG
Sbjct: 1160 PPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGG 1194
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 286 PPPXXWGGXXGGPXPPPXGG 227
PPP GG G P PPP GG
Sbjct: 1110 PPPPPPGGITGVPPPPPIGG 1129
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 182 PPXXKXXXXGGGGXXPPXXGGXXAPPXPPP 271
PP GG PP GG PP PPP
Sbjct: 1136 PPAPPLPEGIGGVPPPPPVGGLGGPPAPPP 1165
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = -1
Query: 995 GGXXXFXXXXXPXXFXGGFFXXPPFXG-GPPPXXKXPXGXXKXXPPXPXGXXGG 837
GG P G PP G G PP P G PP P G GG
Sbjct: 1079 GGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGG 1132
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 180 PPXKXKXXXXGGXXXXPPXGGGXGPPXXPP 269
PP GG PP GG GPP PP
Sbjct: 1136 PPAPPLPEGIGGVPPPPPVGGLGGPPAPPP 1165
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 286 PPPXXWGGXXGGPXPPPXGGXXXXPP 209
PPP GG G P PPP G P
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTP 1174
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 284 PPXXXGGGXGGPXPPPXXGXXXXPPPXXXFXFXGG 180
PP G G G P PPP G P P F GG
Sbjct: 1139 PPLPEGIG-GVPPPPPVGGLGGPPAPPPPAGFRGG 1172
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 284 PPXXXGGGXGGPXPPPXXGXXXXPPP 207
PP GG G P PPP G PP
Sbjct: 1150 PPPPVGGLGGPPAPPPPAGFRGGTPP 1175
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +2
Query: 695 PPPXKKKKKXXPXGGGGXPXXKKKXXGXPPKKPPGGXXXXKXXKKKKTPPXXPXGXGG 868
PPP K+ P GG KK G P KKP K K K P G
Sbjct: 50 PPPPANNKRLNPQGGSNRK--KKADAGTPSKKPKRQPPEPKPRKHKGAKSEKPHRVSG 105
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 270 GGGXGGAXXPPXXGGXXPPPP 208
GGG GG PP GG PP P
Sbjct: 86 GGGGGGGYYPPWNGGYYPPGP 106
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 209 GGGGXXPPXXGGXXAPPXPP 268
GGGG PP GG A P PP
Sbjct: 80 GGGGEMPPPYGGAAAAPPPP 99
Score = 29.5 bits (63), Expect = 6.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 266 GGXGGPXPPPXXGXXXXPPP 207
GG GG PPP G PPP
Sbjct: 79 GGGGGEMPPPYGGAAAAPPP 98
>01_05_0433 - 22094784-22095659
Length = 291
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 270 GGGXGGAXXPPXXGGXXPPPP 208
GGG G A PP G PPPP
Sbjct: 35 GGGGGAARPPPMVPGRVPPPP 55
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 209 GGGGXXPPXXGG-XXAPPXPPP 271
GGGG PP G APP PPP
Sbjct: 55 GGGGRAPPRAAGKSPAPPPPPP 76
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 270 GGGXGGAXXPPXXGGXXPPPP 208
GGG G A PP G PPPP
Sbjct: 859 GGGCGAAPFPPHFGLHLPPPP 879
>12_02_0072 +
13218669-13218706,13218715-13218781,13220400-13220471,
13222107-13222182,13222309-13222943
Length = 295
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 576 GGXXXXXKRGGXXKKKFXKKGXKXXXKKKXGXGGG 680
GG K GG KK+ G K KK G GGG
Sbjct: 147 GGGGDGKKEGGDGKKEEGGDGKKEGEGKKEGDGGG 181
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +1
Query: 181 PPXKXKXXXGGGXXXXPXXGGGX--GPPXPPP 270
PP GGG GGG GPP PPP
Sbjct: 79 PPRPPPQPAGGGEGEDDEEGGGVMIGPPRPPP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.151 0.501
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,674,945
Number of Sequences: 37544
Number of extensions: 637645
Number of successful extensions: 2053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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