Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E17
         (1276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    30   0.59 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   9.7  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 326  LAYKLWDYMDEXQEIVKEYFPVI---FRQIFSENSVKIINKRDNLAIKLGDALDSD 484
            L+ K+W+Y+DE   I+K  +P++      +  +   K   K D  A +L  AL +D
Sbjct: 3158 LSKKVWEYIDEIMSILKTAYPLLALTMETLVDQIQAKFKCKNDGDAFRLVVALLND 3213


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 755 DQALKLGRNVDSDGDRRAYSSSSSVEGQPELYAWSI 862
           +Q LKL    DS  D RAY SSSS+ G P    W +
Sbjct: 321 NQHLKL--RTDSHDDSRAYDSSSSM-GNPAYEKWEV 353


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 774  AEMLTATETDARTQAPAASKVNPSSTPGLSRSSTKPNCTYS 896
            + + TA+ TD+ T + AA+ V  SST  ++ +S   + T S
Sbjct: 989  SSVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSS 1029


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 777 EMLTATETDARTQAPAASKVNPSSTPGLSRSSTKPNCTYSSINMQF 914
           E L   ETD + +A     ++P+  P   R +     TY+ +  +F
Sbjct: 726 EQLLEFETDEKERADLQILISPAGAPDFKRRAEVDMLTYADVLKEF 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,523,041
Number of Sequences: 5004
Number of extensions: 61873
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)