Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E16
         (1360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    28   2.6  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    28   3.4  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   7.9  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 538 VIEPIFPFVMR*IATNSNGFLDGWNFCVLNSERYVAPSVTFDVISVLSVAARGHDVDGS 714
           +I P+F      +  +    L G  F VL+ + Y    +TFD+I+++  AA G    G+
Sbjct: 80  IIAPVFYSAQAYVLFHHIVLLYGPRFSVLSPKLYGGIFITFDIIALILQAAGGGVAGGA 138


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 682 PKALKSHQKSLKVPRIFHCLTHKSSIHPEIHLSS 581
           P +  S   SL  P I+   +   SIHP  HLSS
Sbjct: 213 PHSSSSSHNSLHEPVIYDFSSENPSIHPSNHLSS 246


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +1

Query: 319 IEVVGNNCRVEVTNNYGIIHVVGANSLVNINKRWRGDSVQLLGANCRLIVAGKLMSAPSY 498
           + V GNN    VT  + ++    + S    +  WRG    L+     L+   K +SA + 
Sbjct: 60  MHVAGNNSAESVTIKFRLVPGELSLSPAAEDSEWRGQKSSLVFYYPNLLDLLKQLSADAI 119

Query: 499 EAQLSPSSTDLDDV 540
           + Q  P+    D+V
Sbjct: 120 KYQAFPNEKKPDEV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,275
Number of Sequences: 5004
Number of extensions: 58263
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 749166106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)