Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E16
         (1360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium transp...    30   3.3  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   7.6  
AF038622-3|AAL06048.1|  254|Caenorhabditis elegans Hypothetical ...    29   7.6  

>U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium
           transporter homolog protein4 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -1

Query: 709 HLHHDLEPQPKALKSHQKSLKVPRIFHCLTHKSSIHPEIHLSSSLFTASRMGKSVQ*RRP 530
           H  HD E  P +  +H K L V R    +    S+HPE+ L        R G   +  +P
Sbjct: 436 HGWHDFEAAPDSKINHSKHLPVGRKNRIM----SVHPEMSLEQLASVYDRTGSVGESDQP 491

Query: 529 GPCWMATVGLRRTGLTSASPQRSAY 455
              +M     R++ +  A+   + Y
Sbjct: 492 KRLFMNQTERRKSRMIEANALHALY 516


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = -2

Query: 450  RPEELNAVASPTFVDVHKAVCAHNVDDPVVIRHLHPTIVADHLDVAVISTNINDAVVSDY 271
            R  +L  +   T + +  A    ++D   ++RH   T + D     +   N+N  ++ D 
Sbjct: 1232 RASDLVLLNMQTRISIGAAFNTRHLDQKRLLRHRRNTEIFDSYQGEISGVNVNGLMILDL 1291

Query: 270  FQKTRVRLH 244
            ++    R+H
Sbjct: 1292 YENGSNRIH 1300


>AF038622-3|AAL06048.1|  254|Caenorhabditis elegans Hypothetical
           protein R07C12.4 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 253 NSSLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGIIHVVGANS 396
           NS+     G+  +I  + N  ++E+   N   ++ +++GI+HV+ +N+
Sbjct: 49  NSTQFSTCGSIVLILSKRNPNEVEIT--NLVAKIRSHHGIVHVISSNT 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,430,969
Number of Sequences: 27780
Number of extensions: 370804
Number of successful extensions: 1093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3829657504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)