Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_E13
(1295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 346 2e-95
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 32 0.86
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 32 1.1
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 30 4.6
02_05_0237 + 27095817-27097433 30 4.6
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 6.1
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 29 6.1
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 8.0
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 8.0
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 346 bits (851), Expect = 2e-95
Identities = 171/223 (76%), Positives = 188/223 (84%), Gaps = 1/223 (0%)
Frame = +2
Query: 89 LSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKGR 268
+SK RKFV GVF AELNE LTRELAEDGYSGVEVRVTP+R+E II ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 449 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 628
F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 629 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 754
KVKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 32.3 bits (70), Expect = 0.86
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = -2
Query: 619 YSLSEKHMSGSSVDVIITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 440
+ L++ + GS +++ T V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 439 TIASTTYSETSDKLVS 392
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 601 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRACA 732
A +T S R G++ + P R+E + T RP PG + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = -1
Query: 572 HYKGLQSGS*VHL-QTSLIWHVDHA-----ACQIQQLHNH 471
HY GS + + +TSL+WH + A +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 726 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 619
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 346 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 441
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 601 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRACAP 735
A + R+TRN G A + RP + T + + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 530 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 426
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 569 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 718
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,570,867
Number of Sequences: 37544
Number of extensions: 485862
Number of successful extensions: 1519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4038959244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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