Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E13
         (1295 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal prot...   374   e-103
BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p pro...   374   e-103
AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p pro...   374   e-103
AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA...   374   e-103
X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal prot...   366   e-101
AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila d...    34   0.37 
AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown prot...    34   0.37 
AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF...    34   0.37 
AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE...    34   0.37 
AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD...    34   0.37 
AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC...    34   0.37 
AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB...    34   0.37 
AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA...    34   0.37 

>L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal protein
           S3/AP endonucleaseDNA repair protein protein.
          Length = 246

 Score =  374 bits (920), Expect = e-103
 Identities = 179/223 (80%), Positives = 197/223 (88%)
 Frame = +2

Query: 89  LSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKGR 268
           +SK RKFV  G+FKAELNEFLTRELAEDGYSGVEVRVTP R+E IIMAT+TQ VLGEKGR
Sbjct: 7   ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66

Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
           RIRELT++VQKRFN     +ELYAEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67  RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126

Query: 449 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 628
           +IMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186

Query: 629 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 757
           KVK+MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p
           protein.
          Length = 253

 Score =  374 bits (920), Expect = e-103
 Identities = 179/223 (80%), Positives = 197/223 (88%)
 Frame = +2

Query: 89  LSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKGR 268
           +SK RKFV  G+FKAELNEFLTRELAEDGYSGVEVRVTP R+E IIMAT+TQ VLGEKGR
Sbjct: 14  ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 73

Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
           RIRELT++VQKRFN     +ELYAEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 74  RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 133

Query: 449 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 628
           +IMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGI
Sbjct: 134 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 193

Query: 629 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 757
           KVK+MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 194 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 236


>AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p
           protein.
          Length = 246

 Score =  374 bits (920), Expect = e-103
 Identities = 179/223 (80%), Positives = 197/223 (88%)
 Frame = +2

Query: 89  LSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKGR 268
           +SK RKFV  G+FKAELNEFLTRELAEDGYSGVEVRVTP R+E IIMAT+TQ VLGEKGR
Sbjct: 7   ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66

Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
           RIRELT++VQKRFN     +ELYAEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67  RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126

Query: 449 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 628
           +IMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186

Query: 629 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 757
           KVK+MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA
           protein.
          Length = 246

 Score =  374 bits (920), Expect = e-103
 Identities = 179/223 (80%), Positives = 197/223 (88%)
 Frame = +2

Query: 89  LSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKGR 268
           +SK RKFV  G+FKAELNEFLTRELAEDGYSGVEVRVTP R+E IIMAT+TQ VLGEKGR
Sbjct: 7   ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66

Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
           RIRELT++VQKRFN     +ELYAEKVA RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67  RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126

Query: 449 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 628
           +IMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186

Query: 629 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 757
           KVK+MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal protein
           S3 protein.
          Length = 246

 Score =  366 bits (901), Expect = e-101
 Identities = 176/223 (78%), Positives = 194/223 (86%)
 Frame = +2

Query: 89  LSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKGR 268
           +SK RKFV  G+FKAELNEFLTRELAEDGYSGVEVRVTP  +E IIMAT+TQ VL EKGR
Sbjct: 7   ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGR 66

Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
           RIRELT++VQKRFN     +ELYAEKVA RGLCAIAQAESLRYKL G LAVRRACYGVLR
Sbjct: 67  RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGELAVRRACYGVLR 126

Query: 449 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 628
           +IMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186

Query: 629 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 757
           KVK+MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila
           dodeca-satellite protein1 protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown
           protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF,
           isoform F protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE,
           isoform E protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD,
           isoform D protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC,
           isoform C protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB,
           isoform B protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


>AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA,
           isoform A protein.
          Length = 1301

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 385
           +LG+ G+R+RE+  V   R NIP QS E  +E +   G    IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,480,724
Number of Sequences: 53049
Number of extensions: 795928
Number of successful extensions: 2879
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 7008348120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)