Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E13
         (1295 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   348   6e-96
Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    31   2.3  
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    31   2.3  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   3.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   3.1  
Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical pr...    30   4.1  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    29   7.2  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  348 bits (855), Expect = 6e-96
 Identities = 164/222 (73%), Positives = 191/222 (86%)
 Frame = +2

Query: 86  NLSKXRKFVGXGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEXIIMATRTQSVLGEKG 265
           N++K +K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E IIMATRTQ+VLGE+G
Sbjct: 6   NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERG 65

Query: 266 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 445
           RRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 66  RRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 125

Query: 446 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 625
           RFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LRQGV+G
Sbjct: 126 RFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIG 185

Query: 626 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 751
           IKVKIMLP+D +G+NGP+   PDH+ + EP++E +P EP S+
Sbjct: 186 IKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227


>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 624 ESRSKSCCRGTSKARTARRSHNQTTSW*QSPRTSLCPSS 740
           E+  K C   T+ A       NQ+ S   SP  S+CPSS
Sbjct: 215 EAEQKRCVEATAAAALLDAFGNQSDSSSSSPHASMCPSS 253


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 624 ESRSKSCCRGTSKARTARRSHNQTTSW*QSPRTSLCPSS 740
           E+  K C   T+ A       NQ+ S   SP  S+CPSS
Sbjct: 215 EAEQKRCVEATAAAALLDAFGNQSDSSSSSPHASMCPSS 253


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 580  QHCYQTCASQTRSTRNQGQNHVA 648
            Q CY  CAS T ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 580  QHCYQTCASQTRSTRNQGQNHVA 648
            Q CY  CAS T ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical
           protein F40F8.1 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 814 SYILSDSGDRLRQRRGREGAHFAGRLEGH 728
           +Y+   +GD LR  R REG+ F   +E H
Sbjct: 27  NYVHLSAGDLLRAERQREGSEFGALIESH 55


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 239 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 358
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 574 IITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 398
           ++TR   + +E+IY L      TT+      FTTT    H +  NTI+S + +  + K+
Sbjct: 89  LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,585,518
Number of Sequences: 27780
Number of extensions: 387350
Number of successful extensions: 1134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)