Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E12
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    35   0.021
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   2.4  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    27   4.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   7.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   9.7  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +1

Query: 463 VSGARNG-EMMDTFDFLIKSLSSANNYVSMLTREQLSVLRSIRPSLLYEFLQEVAKVRSD 639
           V  AR G +++D  DF + S SSA  +  +LT +Q +++       +   +++ +   S 
Sbjct: 210 VESARAGLDLLDQSDFSLTSPSSAKEFKQLLTLKQSTIIPRTPQKTVRSIVKQTSSPHSS 269

Query: 640 RRMRRALPNE-CAFCKNNGEN 699
           +  + +LP+    F  N+G++
Sbjct: 270 KMPKHSLPSSPTPFNSNSGDS 290


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 344 FSRMSSISVLFGAGSAALGSCRASKLRRS--FPPL*NDG 234
           F+      V FG+G+  +GS R +K ++S   PP  NDG
Sbjct: 511 FAEAVKKEVTFGSGNTNIGSLRQTKFKQSNYTPPELNDG 549


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 362 VPLSRMFSRMSSISVLFGAGSAALGSCRASKLRRSFPPL*NDGVVAENDP 213
           VP + +F+R S I   +  G +A+ +CR++   RS  P  ND + +   P
Sbjct: 65  VPCTYLFARTSLILGRYKQGISAVEACRSN--WRSIQPNINDSISSRGHP 112


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 472 ARNGEMMDTFDFLIKSLSSANNYVSMLTREQLSVLRS 582
           +RN +++  F  ++   S  N YVSM   +Q   +RS
Sbjct: 255 SRNLDLLRKFSHVLHDFSGPNAYVSMYLAKQTDFVRS 291


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 268 NLLARQEPRAADPAPNSTEMEDILLNMRLNGTDPLFDDMDPNHNYFLGGRPES 426
           N+L   E R + P   +  ++D  +N R N   P+F  +DP H +  G   +S
Sbjct: 745 NILYFAENRNS-PVLGTIHLKDAQVN-RYNANLPIFSIIDPPHEFLTGENYQS 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,368,041
Number of Sequences: 5004
Number of extensions: 89153
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)