Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_E12
(1272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730... 32 0.84
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411... 32 0.84
01_06_0778 - 31920956-31921502,31921639-31921771,31922287-319223... 31 1.5
05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364... 31 1.9
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 31 1.9
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 31 2.6
07_01_0862 - 7172083-7172931 30 3.4
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 30 4.5
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 29 5.9
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 29 5.9
>12_02_1099 -
26072301-26072468,26072642-26072751,26072966-26073014,
26073081-26073495,26073604-26074019
Length = 385
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 382 MDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEM----MDTFDFLIKSLS 525
MDPN F P S A+ N+W+ S SG +G + +DT D ++ S
Sbjct: 1 MDPNGFDFFSQDPISSAAGNIWSSQPSASGPSHGSVPRAGVDTLDLNTQAAS 52
>01_06_0352 +
28638453-28639391,28639486-28640034,28640388-28641195,
28641279-28641389,28641556-28641683
Length = 844
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 382 MDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEM----MDTFDFLIKSLS 525
MDPN F P S A+ N+W+ S SG +G + +DT D ++ S
Sbjct: 1 MDPNGFDFFSQDPISSAAGNIWSSQPSASGPSHGSVPRAGVDTLDLNTQAAS 52
>01_06_0778 -
31920956-31921502,31921639-31921771,31922287-31922374,
31922857-31923198
Length = 369
Score = 31.5 bits (68), Expect = 1.5
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 506 FSSKVCHLLTTTCRC*RGNNSRYYVRFDLVSCTSFCRRSLKFAV 637
+S+ V LL RC + R+ R D+V+C S CRR AV
Sbjct: 51 WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAV 94
>05_04_0106 -
18034965-18034975,18035128-18035323,18036320-18036412,
18037219-18037264,18037411-18037538,18037892-18037959,
18038058-18038084,18038181-18038291,18038404-18038482
Length = 252
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 460 SVSGARNGEMMDTFDFLIKSLSSANNYVSMLTREQLSVLRSIRPSLLY 603
SV GA++ + D FDF++ S S N L +E L + + P++ Y
Sbjct: 63 SVDGAKSSSVGDGFDFILLSPSDVNERNKALLQEVLLLYKQELPTMDY 110
>01_07_0383 -
43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/104 (23%), Positives = 49/104 (47%)
Frame = +1
Query: 406 LGGRPESVASSNLWNDNSSVSGARNGEMMDTFDFLIKSLSSANNYVSMLTREQLSVLRSI 585
LG + ++ N ++N+S+S +G + +S S N Y + + +++RS
Sbjct: 269 LGVKLQNCVRDNSSSENTSLSKVLSGTLSSA-----ESAFSMNKYFLDFLKSKSAIIRSA 323
Query: 586 RPSLLYEFLQEVAKVRSDRRMRRALPNECAFCKNNGENEECYSS 717
SLL +++ V+ V ++ M+ P N ++ C+SS
Sbjct: 324 TYSLLASYIKHVSHVFNEEAMKVLSP--ALLGAFNEKDPSCHSS 365
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 766 AFRCPRCGATGDRAHTIKYCPENSD 840
A R RC +R HT KYCP++ +
Sbjct: 301 AGRVKRCSKCDERGHTYKYCPKDKE 325
>07_01_0862 - 7172083-7172931
Length = 282
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 914 EADGGTRRRADKLPERSEPVTNKLASEFSGQYLIV*ARSPVAPHRGQR----KARSTGHS 747
E +GG RRR ++ R E T+ +SE G+ +V AR V R + R TG
Sbjct: 6 EVEGGGRRRVVRIIFRDEDATDSSSSEEEGEGEVVAARRVVVKRTRLRCQEVERRFTGVR 65
Query: 746 TRP 738
RP
Sbjct: 66 RRP 68
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 755 RCCVLSAVRGAAPPVTALTQSNTAR 829
R C L G PP+ AL+QS TAR
Sbjct: 731 RFCTLVLQEGVVPPLVALSQSGTAR 755
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 755 RCCVLSAVRGAAPPVTALTQSNTARRTLMLAYLLQVPI 868
R C + GA PP+ AL+QS T R +++ P+
Sbjct: 792 RFCSIVLQEGAVPPLVALSQSGTPRAREKVSHFSSFPL 829
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 29.5 bits (63), Expect = 5.9
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 253 GNDLLNLLARQEPRAADPAPNSTEMEDILLNMRLNGTDPLFDDMDPNHNYFLGGRPESVA 432
G D LA+ + ADP +S ++E+++ N + D L + MD N PE +
Sbjct: 72 GEDPKLTLAKILLKKADPDASSLDVENLIANKKAKLDDILREFMDANRQEQTSESPEETS 131
Query: 433 SSNLWNDNSSVS 468
+ ++ S+S
Sbjct: 132 KPMVDKNSPSMS 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,794,843
Number of Sequences: 37544
Number of extensions: 641632
Number of successful extensions: 1880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1880
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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