Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E12
         (1272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              98   2e-22
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.3  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 97.9 bits (233), Expect = 2e-22
 Identities = 39/66 (59%), Positives = 48/66 (72%)
 Frame = +1

Query: 640 RRMRRALPNECAFCKNNGENEECYSSHALKDWRGRVLCPVLRAFRCPRCGATGDRAHTIK 819
           ++ ++ LP EC FC+NNGE E  Y  H LKD  GRV CPVLRA+ CP CGA GD AHT+K
Sbjct: 30  KKNKKPLPTECVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89

Query: 820 YCPENS 837
           YCP+ +
Sbjct: 90  YCPKGT 95


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 220 FSATTPSFQRGGNDLLNLLARQEPRAADPAPNSTEME-DILLNMRLNG 360
           FSAT  +      +L    + ++P+  +P P  T  + + +L+M L G
Sbjct: 15  FSATLDTVVPNSGELFKAGSAEQPKEQEPLPPVTPPQGENMLDMDLRG 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,083
Number of Sequences: 438
Number of extensions: 5812
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)