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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E11
         (1314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...   112   1e-25
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    92   1e-19
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    88   3e-18
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    77   4e-15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    62   1e-10
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    58   4e-09
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    58   4e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    55   2e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    52   2e-07
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    52   2e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    50   5e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    48   2e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    48   2e-06
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    48   4e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    48   4e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    48   4e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    47   5e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    47   5e-06
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    46   1e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    45   2e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    44   4e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    43   8e-05
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    42   2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    42   2e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    41   4e-04
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    41   4e-04
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    40   0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    40   0.001
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    39   0.001
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    38   0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    37   0.005
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    37   0.007
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    37   0.007
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    36   0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    35   0.022
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    35   0.022
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      34   0.050
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    34   0.050
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    33   0.088
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    31   0.47 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    30   0.82 
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    29   1.1  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    29   1.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   1.9  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    28   3.3  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   5.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   7.6  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score =  112 bits (269), Expect = 1e-25
 Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 10/257 (3%)
 Frame = +2

Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIRE--PG-NDPYAFLEFTCHXXXXXXXXX 397
           TL++G L+P VTE F+  ++  +G     K IR    G N  Y F+EF            
Sbjct: 94  TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153

Query: 398 MNKRVVLDKEM-KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEI 568
            NK +     + K+NWA+  G + K+   ++ + IFVGDLSP +    +   FA  +   
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213

Query: 569 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA---K 739
            + +I+ DPQT  S+GY FV F  + D ++A+  M GQ  G R IR   +T K  A    
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFS 273

Query: 740 GVNEGAPSSKRAKQPTFDEVYNQSSPT-NTTVYCGGFTSNIITEELMQNTFSQFGQIQDI 916
            VN    S       +  +   Q + T N+TV+ GG  S  ++EE ++  F  FG+I  +
Sbjct: 274 PVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGL-SKFVSEEELKYLFQNFGEIVYV 332

Query: 917 RVFRXKGYAFIRLLQRK 967
           ++   KG  F++ + R+
Sbjct: 333 KIPPGKGCGFVQFVNRQ 349


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 14/260 (5%)
 Frame = +2

Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREPGNDP-----YAFLEFTCHXXXXXXX 391
           TL++G+L+P +   F+  L+  +      K +R   +       Y F++F+         
Sbjct: 86  TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145

Query: 392 XXMNKRVVLDKE--MKVNWATSPGNQPKTDTSN--HHHIFVGDLSPEIETNILREAFAP- 556
              N  ++       K+NWAT  G Q     S      IFVGDL P  E + L   F   
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205

Query: 557 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 736
           +   ++ +I+ DP T  S+ Y FV F  + + + A+  M G     R +R + ++ K  A
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265

Query: 737 KGVNEGA----PSSKRAKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQ 904
               + A    P+S   +QP  D       P NTTV+ GG  SN ++E+ +Q  F  FG+
Sbjct: 266 SIAADSALGIVPTSTSNRQPNQDLC--SMDPLNTTVFVGGLASN-LSEKDLQVCFQPFGR 322

Query: 905 IQDIRVFRXKGYAFIRLLQR 964
           I +I++   KG  F++  ++
Sbjct: 323 ILNIKIPFGKGCGFVQYSEK 342



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 41/86 (47%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FVG L+  +    L+  F PFG I N +I         KG  FV + +K+ AE AI  M
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP------FGKGCGFVQYSEKSAAEKAINTM 352

Query: 674 NGQWLGSRSIRTNWSTRKPPAKGVNE 751
            G  +G+  IR  W     P   +++
Sbjct: 353 QGALVGTSHIRLAWGHNTLPVSALSQ 378


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 66/244 (27%), Positives = 107/244 (43%), Gaps = 3/244 (1%)
 Frame = +2

Query: 206 GAASHPKTLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREP---GNDPYAFLEFTCHXX 376
           G A    +LYVG LDPSVTE  L  LF  IG V   +  R+     +  YA++ F     
Sbjct: 74  GTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMED 133

Query: 377 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 556
                  +N  ++  +  ++ W+    +  K  T N   +F+ +L P I+   L + F+ 
Sbjct: 134 GEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSA 190

Query: 557 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 736
           FG+I +C++  D +   +KGY FV F     A AAI+ +NG  L  + +       +   
Sbjct: 191 FGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRER 249

Query: 737 KGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDI 916
           +       S   A +  F  VY ++  T             ITE+   + F QFG+I  +
Sbjct: 250 Q-------SKVEALKANFTNVYIKNLDTE------------ITEQEFSDLFGQFGEITSL 290

Query: 917 RVFR 928
            + +
Sbjct: 291 SLVK 294



 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
 Frame = +2

Query: 230 LYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREPGNDP--YAFLEFTCHXXXXXXXXXMN 403
           +Y+ NLD  +TE     LFGQ G +     +++  + P  + F+ +  H         +N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322

Query: 404 KRVVLDKEMKVNWATSPG----------NQPKTDTSNHH---HIFVGDLSPEIETNILRE 544
            +    K++ V  A               Q K +  N +   ++F+ +L  E++   L+ 
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382

Query: 545 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 724
            F+ FG I++ +I+ D Q  KSKG+ FV +    +A  A+  MN + L  + +    + R
Sbjct: 383 EFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441

Query: 725 K 727
           K
Sbjct: 442 K 442



 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 10/250 (4%)
 Frame = +2

Query: 230 LYVGNLDPSVTEVFLCTLFGQIGXVKGCKX-IREPGNDP-YAFLEFTCHXXXXXXXXXMN 403
           +++ NLDP++    L   F   G +  CK  + E GN   Y F+ F            +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229

Query: 404 KRVVLDKEMKVNWATSPGN-QPKTDT--SNHHHIFVGDLSPEIETNILREAFAPFGEISN 574
             ++ DK++ V    S    Q K +   +N  ++++ +L  EI      + F  FGEI++
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289

Query: 575 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 754
             +V+D Q  K +G+ FV++     A+ A+  +N +    + +    + +K   +     
Sbjct: 290 LSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHERE----- 343

Query: 755 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVF--- 925
               KR +Q   +++ N+    N  +       + + +E ++  FS FG I   ++    
Sbjct: 344 EELRKRYEQMKLEKM-NKYQGVNLFI---KNLQDEVDDERLKAEFSAFGTITSAKIMTDE 399

Query: 926 --RXKGYAFI 949
             + KG+ F+
Sbjct: 400 QGKSKGFGFV 409



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +2

Query: 716 STRKPPAKGVNE---GAPSSKRAKQPT-FDEVYNQS--SPTNTTVYCGGFTSNIITEELM 877
           ST   P K   E    A  S+    PT    V   S  +PT+ ++Y G    ++ TE ++
Sbjct: 38  STETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSV-TEAML 96

Query: 878 QNTFSQFGQIQDIRVFR 928
              F+  G +  IRV R
Sbjct: 97  FELFNSIGPVASIRVCR 113


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
 Frame = +2

Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREP---GNDPYAFLEFTCHXXXXXXXXX 397
           T+Y+GNLD  VT+  L  L  Q G V      R+     ++ + F EF            
Sbjct: 12  TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 398 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 577
           +N+  +  K ++VN A+        +T    ++FVG+L P ++  +L + F+  G++   
Sbjct: 72  LNQVKLFGKPIRVNRASQDRG---VNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128

Query: 578 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 754
             V   +  +SKGY FVS+     A+AAI+AMN Q+L ++ I  +++ ++   KG   G
Sbjct: 129 PQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR-EGKGERHG 186


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 44/154 (28%), Positives = 73/154 (47%)
 Frame = +2

Query: 461 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 640
           +P  D++    +FVG LS  ++   L + F  +G I   R++ D Q+ +SKGY +V F  
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313

Query: 641 KADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPT 820
              A+AA+ A   + +  R +  + S  +P     N    + +RA         +Q S  
Sbjct: 314 PEAAKAAVAANGTKEIDGRMVNLDLSNPRP----ANPQPYAQQRA-----GNFGDQLSEP 364

Query: 821 NTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRV 922
           + TV+ G  + N  TE+ +   F   G IQ IR+
Sbjct: 365 SDTVFVGNLSFN-ATEDDLSTAFGGCGDIQSIRL 397



 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 26/76 (34%), Positives = 44/76 (57%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FVG+LS     + L  AF   G+I + R+  DPQ+ + KG+ +V+F     A+  ++ M
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426

Query: 674 NGQWLGSRSIRTNWST 721
           NG ++  R  R ++ST
Sbjct: 427 NGHFIAGRPCRLDFST 442


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +2

Query: 449 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 622
           +P + P  D  N   +FV +L   I   T  L E F+ FG I +C +   P T  SKGY 
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465

Query: 623 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 739
           FVSF    +A  AI  +NG   G + +  N++ ++   K
Sbjct: 466 FVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRK 504



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIV--RDPQTLKSKG---YAFVSFVKKADAEA 658
           I+VG+L    +++ L E F PFG  S   ++  +  ++  SK    +AF++F  K  A+ 
Sbjct: 22  IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81

Query: 659 AIQAMNGQWLGSRSIRTNWS-----TRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 823
           AI ++NG      +++  ++      +     GV++   S+    +  F ++   +  T 
Sbjct: 82  AIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETR 141

Query: 824 TTV 832
            TV
Sbjct: 142 PTV 144


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 30/96 (31%), Positives = 52/96 (54%)
 Frame = +2

Query: 482 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 661
           NH  +FVG+L  ++    L +AF+ +  +   ++VRD +  K++G+ FVSF        A
Sbjct: 28  NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKA 86

Query: 662 IQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 769
            +  NG+++GSR ++ + +T       VNE    SK
Sbjct: 87  WREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 26/94 (27%), Positives = 52/94 (55%)
 Frame = +2

Query: 452 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 631
           P + P+   +  + +FV  ++  ++ + L++ F+ FG +++ RI+R+P T  S+G+ F+S
Sbjct: 89  PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148

Query: 632 FVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 733
           F    +A +AI  +N Q    R +    + R  P
Sbjct: 149 FSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FVG++  ++    + E F   G +   ++V DP+T   KGY F  F        A++ +
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 674 NGQWLGSRSIRTNWSTRKP 730
           N   LG R IR  + +  P
Sbjct: 69  NNSELGPRKIRVEFPSNDP 87



 Score = 34.3 bits (75), Expect = 0.038
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 230 LYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREP---GNDPYAFLEFTCHXXXXXXXXXM 400
           ++VGN+   V+E  +  +F Q+G VK  K + +P       Y F EF            +
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 401 NKRVVLDKEMKVNWATSPGNQPKTDTS 481
           N   +  ++++V +   P N P+ + S
Sbjct: 69  NNSELGPRKIRVEF---PSNDPRRNQS 92


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           + VG+L+P +  ++L  AF PFGEI +  + R  + +  + YAFV F +  DA+ A++ M
Sbjct: 8   VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENM 66

Query: 674 NGQWLGSRSIRTN 712
           N   L  R IR +
Sbjct: 67  NYSILCDRCIRVS 79



 Score = 34.3 bits (75), Expect = 0.038
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIR-EPGND-PYAFLEFTCHXXXXXXXXXM 400
           T++VGNL PSVTE  L   F   G +      R E   D  YAF+EF            M
Sbjct: 7   TVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENM 66

Query: 401 NKRVVLDKEMKVN 439
           N  ++ D+ ++V+
Sbjct: 67  NYSILCDRCIRVS 79



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 827 TVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFR-----XKGYAFI 949
           TV+ G    ++ TE L+ N F  FG+I  + + R      + YAF+
Sbjct: 7   TVHVGNLAPSV-TESLLYNAFIPFGEIISVALHRKEKAVDRSYAFV 51


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 39/164 (23%), Positives = 82/164 (50%), Gaps = 6/164 (3%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FV +L+ + + + L   F+  G I +  +V +P+T +++GY FV+F    DA+ A + +
Sbjct: 7   LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66

Query: 674 NGQWLGSRSIRTNWST-RKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGGFT 850
             + L  R +R +++T RK      ++     K  +Q     +  ++ P           
Sbjct: 67  KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPW---------- 116

Query: 851 SNIITEELMQNTFSQFGQIQDIRV-----FRXKGYAFIRLLQRK 967
            +I   + ++  FS+FG++++I++      R  G+AF+ +  RK
Sbjct: 117 -SIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRK 159



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 17/207 (8%)
 Frame = +2

Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREPG---NDPYAFLEFTCHXXXXXXXXX 397
           TL+V NL     +  L   F  +G +K    +  P    N  Y F+ F+           
Sbjct: 6   TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65

Query: 398 MNKRVVLDKEMKVNWATSPGNQPKTDTS------------NHHHIFVGDLSPEIET-NIL 538
           +  + +  + +++++AT P  + + DT             N   + + +L   I+    L
Sbjct: 66  LKNKKLHGRILRLDFAT-PRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124

Query: 539 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 718
              F+ FG++   +I       +  G+AFV    +  AE A+ ++NG  +  R I  +W+
Sbjct: 125 EPHFSKFGKVREIKIPTKGGG-RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183

Query: 719 TRKPPAKGVN-EGAPSSKRAKQPTFDE 796
             K   +    + A S +  K+   DE
Sbjct: 184 VSKDAFEATTLKDASSEEENKEFVSDE 210



 Score = 34.7 bits (76), Expect = 0.029
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 667
           +FV +L  E     L   F  FG ++  ++V+DP T +S G  F+ F  + D +  ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 29/107 (27%), Positives = 48/107 (44%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FV  L+P  +   L   F+ FG+I +C+++RD +T  S  YAF+ F  K   E A   M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305

Query: 674 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 814
               +    I  ++S      +         KR+   + D  Y++ S
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRS 352


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
 Frame = +2

Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREP---GNDPYAFLEFTCHXXXXXXXX 394
           +T++V  L   +T   L   F Q G V+  + +R+     +   A++EF CH        
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAI 298

Query: 395 XMNKRVVLDKEMKVNWATSPGNQPKTDTSN----------HHHIFVGDLSPEIETNILRE 544
            ++ + +L   + V    +  N+   + +            H + V ++   +    ++ 
Sbjct: 299 ALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKA 358

Query: 545 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 706
            F PFG+I    + RD Q  +SKG+ ++ +     A  A++ MNG  L  R++R
Sbjct: 359 IFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
 Frame = +2

Query: 224 KTLYVGNLDPS--VTEVFLCTLFGQIGXVKGCKXIREPGNDPYAFLEFTCHXXXXXXXXX 397
           KT+YVGNL P+  + E+  C    + G ++    + E      +FL+   H         
Sbjct: 115 KTVYVGNLPPNTPIDEILSCV---RTGPIESAWILPEKNCAFISFLD-PSHATAFFQDAA 170

Query: 398 MNKRVVLDKEMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 562
           + +  +   E+KV W  +  +          +    ++F+G+L   I  + +RE   PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230

Query: 563 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ--AMNGQW 685
            I   +IV +      +  AFV F+  A A  A+Q   +N +W
Sbjct: 231 PIDQIKIVTE------RNIAFVHFLNIAAAIKAVQELPLNPKW 267



 Score = 35.1 bits (77), Expect = 0.022
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)
 Frame = +2

Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREPGNDPYAFLEFTCHXXXXXXXXXMN 403
           +T+Y+GN+    T   +C    + G +   + ++E       F++             ++
Sbjct: 323 RTVYIGNIHADTTIEEICNAV-RGGLLHNIRYLQEKHICFVTFVD-PVSAFRFFEMSNIH 380

Query: 404 KRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEI 568
             V+ ++ +K+ W    G  P             +I++G+    +    L+E F  FGEI
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEI 440

Query: 569 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 664
                 R+      K  AFV+F   A A  AI
Sbjct: 441 EYVNFFRE------KNCAFVNFTSLASAINAI 466



 Score = 30.7 bits (66), Expect = 0.47
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 830 VYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRXKGYAFI 949
           +Y G    ++  E L ++ F +FG+I+ +  FR K  AF+
Sbjct: 416 IYIGNADDSLTIERLKED-FEEFGEIEYVNFFREKNCAFV 454



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 5/170 (2%)
 Frame = +2

Query: 464 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC---RIVRDPQTLKSKGYAFVSF 634
           P   T     ++VG+L P            P  EI +C     +     L  K  AF+SF
Sbjct: 107 PNNTTQPVKTVYVGNLPPN----------TPIDEILSCVRTGPIESAWILPEKNCAFISF 156

Query: 635 VKKADAEAAIQ--AMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQ 808
           +  + A A  Q  A+    +    ++  W        G N  + SS             Q
Sbjct: 157 LDPSHATAFFQDAALKRLTIRGTEVKVGW--------GKNSASNSSVLLAV--------Q 200

Query: 809 SSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRXKGYAFIRLL 958
            S     V+ G    N ITE+ ++     FG I  I++   +  AF+  L
Sbjct: 201 QSGACRNVFLGNLP-NGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFL 249


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           I+VG+L        L + F   G +   RI  +P T +SKG+  V F  + DA ++I+ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340

Query: 674 NGQWLGSRSIR---TNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGG 844
           NG   G R ++    +++T  P    V  G PS   A  P    +   +SP     +   
Sbjct: 341 NGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSV--AYTPPVMHIPTTNSPLTPQSFTNS 398

Query: 845 F 847
           F
Sbjct: 399 F 399



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 28/104 (26%), Positives = 47/104 (45%)
 Frame = +2

Query: 455 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 634
           GN  K  T     ++VG+LS ++    L+E     G + NC I+  P  L SKG A + +
Sbjct: 56  GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEY 113

Query: 635 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 766
               +A  AI+ ++ Q    R +       +    G +  +PS+
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSA 157



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREP 331
           + +YVGNL   V    L    GQ+G V  C+ +  P
Sbjct: 66  RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = +2

Query: 473 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 652
           D S+  +I++G+L  ++  + +   F+ FGE  +  +VRD +T KSKG+AF+ +  +   
Sbjct: 26  DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85

Query: 653 EAAIQAMNGQWLGSRSIRTNW-STRKPPAK 739
             A+  M    L  R +R +  ++ K P K
Sbjct: 86  VLAVDNMTNVKLLDRLVRVDHVASYKVPQK 115



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +2

Query: 230 LYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIR--EPGNDP-YAFLEFTCHXXXXXXXXXM 400
           +Y+GNLD  + E  +  +F + G       +R  E G    +AFL++            M
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92

Query: 401 NKRVVLDKEMKVNWATS 451
               +LD+ ++V+   S
Sbjct: 93  TNVKLLDRLVRVDHVAS 109


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 31/103 (30%), Positives = 51/103 (49%)
 Frame = +2

Query: 398 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 577
           +N  + +D+ ++V+  + P  Q   DT     +FVG+L+ E E   L   F   G I   
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299

Query: 578 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 706
           RIVRDP+T   KG+A++ F      + A+     +    R++R
Sbjct: 300 RIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLR 342


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 25/70 (35%), Positives = 38/70 (54%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +F+  LS + + + +   F  +G I   R+VR+  T KS GYAFV F ++ D + A +A 
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161

Query: 674 NGQWLGSRSI 703
            G  L  R I
Sbjct: 162 AGLMLNGRRI 171


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 1/159 (0%)
 Frame = +2

Query: 464 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 643
           P+    +++ +F+ ++ PE+  N ++  F  +  IS  R++R      S   AF+    +
Sbjct: 65  PEWQKPSYYMLFISNIDPEVSENDIKYLFQRYNFIS-ARVLRCVDGT-STSIAFIWLANE 122

Query: 644 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQ-SSPT 820
           +D + A   M G +   RSI  + S +    K     +P      QP      NQ + P 
Sbjct: 123 SDIQNAQVEMQGAFCLKRSILVH-SVKSD--KNTYLSSPGFYGTPQPL-----NQFTDPN 174

Query: 821 NTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRXKG 937
           NT VY      NI T+EL ++ F  FG+I   +V    G
Sbjct: 175 NTAVYVHQLPENITTQEL-RSYFLHFGEILYTQVNNNSG 212


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 32/47 (68%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 634
           +F+G L+ E   + LR+ F  FGE+ +C ++RD  T +S+G+ F++F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211



 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 1/146 (0%)
 Frame = +2

Query: 230 LYVGNLDPSVTEVFLCTLFGQIGXVKGCKXIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 409
           +++G L+   T+  L   F Q G V  C  +R+          F            M+K 
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224

Query: 410 VVLDKEMKVNWATSPGNQ-PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 586
             LD ++       P    P+ +      +FVG +  +      R  F  FG + +  ++
Sbjct: 225 HHLDGKI-----IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279

Query: 587 RDPQTLKSKGYAFVSFVKKADAEAAI 664
            D  T + +G+ FV++  ++  EA +
Sbjct: 280 MDKDTGRPRGFGFVTYENESAVEATM 305


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 20/76 (26%), Positives = 43/76 (56%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           ++VG++  E+    + + F   G + + ++V DP++ + KGY F  +   A A +A++ +
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66

Query: 674 NGQWLGSRSIRTNWST 721
           N    G+R +R ++ T
Sbjct: 67  NNYDAGTRRLRVDFPT 82


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
 Frame = +2

Query: 434 VNWATSPGNQPKTDTS--NHHHIFVGDLSPEIET--NILREAFAPFGEISNCRIVRDPQT 601
           V+W +   + P    S  +  +++V +L   + T  + L + F+PFG I +  +   P +
Sbjct: 362 VHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNS 421

Query: 602 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 727
             SKGY FV+F +   A  A   +NG  +G + I   ++ RK
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463



 Score = 29.9 bits (64), Expect = 0.82
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 797 VYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDI 916
           V  Q    ++T+Y G   S +  EE++++ FS++GQ++ I
Sbjct: 8   VPGQYEDESSTIYVGNIDSRLSDEEIIKH-FSKYGQVESI 46


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 548 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTNWST 721
           F PFG +  C I   P+T  S+ +AFV +    DAE A   ++G+ L  G   +R  W+ 
Sbjct: 27  FEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85

Query: 722 RKPPA 736
           + PP+
Sbjct: 86  QPPPS 90


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +2

Query: 434 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI----VRDPQT 601
           V+ +    N P    ++   +FVG LS   + + +R  F   G +    I    VR    
Sbjct: 27  VHASAEQSNTP-AQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTR 85

Query: 602 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 703
           L   G AFV+F  + D + AI+ +NG+ L  R I
Sbjct: 86  LVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 605 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 703
           + +G+ FVSF    D   AI+ MNG+ +G  ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           I++ +L   +  + + E   PFG++ + +++++     SKG+ F  F   +DAE AI  +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371

Query: 674 NGQWLGSRSIRTNWSTRKPPAKGVNEGA--PSSKRAKQPTFDEVYNQSSPTNTTVYCGGF 847
           +G+      +   ++       G+N+     S+  A      +  +QS PT         
Sbjct: 372 DGKDTYGNKLHAQFA-----CVGLNQAMIDKSNGMAILTELAKASSQSIPTRVLQLHNLI 426

Query: 848 TSNIITE--------ELMQNTFSQFGQIQDIRVFRXKG 937
           T + I +        E ++  FS +G + DI++ R  G
Sbjct: 427 TGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIG 464


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
 Frame = +2

Query: 485 HHHIFVGDLSP--EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 658
           ++ ++VG ++P  +IE  + R  FA +G+I   R+      L S+G AF++++ +A+A+ 
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRH-FAEWGDIERIRV------LNSRGIAFITYLNEANAQF 225

Query: 659 AIQAMNGQWLG-SRSIRTNWSTRKP-PAKGVNEGAPSSKRA 775
           A +AM  Q L     +   W+T  P PA          +RA
Sbjct: 226 AKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRLEERA 266



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +2

Query: 821 NTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRXKGYAFIRLL 958
           N T+Y GG T     EE++   F+++G I+ IRV   +G AFI  L
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYL 218


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 227 TLYVGNLDPSVTEVFLCTLFG-QIGXVKGCKXIREPGNDPYAFLEF 361
           T+YVGNL PS +E  L  LF  Q+G  + C   R  GN P  F+EF
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +2

Query: 500 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 679
           V +LS +     LR+ F  FG I    + +D +T ++KG+AFVS+  +  A  A   ++G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265

Query: 680 QWLGSRSIRTNWS 718
               +  +R  +S
Sbjct: 266 YGWNNLILRCEFS 278


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 611 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAKQPT 787
           +G AF +F    +A+  +Q +NG  +  R +R  W  + PPA+    E     KRA +  
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAVEER 332

Query: 788 FDEVYNQSSPTN 823
            +++ +  S  N
Sbjct: 333 KNQLKSPFSVAN 344


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 221 PKTLYVGNLDP-SVTEVFLCTLFGQIGXVKGCKXIREPGNDPYAFLEF 361
           P +++VG LDP + T   L  LF + G V  CK I +     +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 4/167 (2%)
 Frame = +2

Query: 470 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 649
           ++T+   ++F+G+L        + EAF  FG+I + +I      L  K  AFV F+   D
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI------LSKKNIAFVHFLNIRD 346

Query: 650 AEAAIQAM--NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPT- 820
           A   ++ +  +  +   R    +      P         +SK+    T D    Q S   
Sbjct: 347 AIKVVRTLSCDPDYHSWRIFFGSDRCANHPPSFDERSCFTSKQNPDTTSDRCRQQESKDN 406

Query: 821 -NTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRXKGYAFIRLL 958
            N TV+ G   +     E+      + G +QD      K   F+  +
Sbjct: 407 GNRTVFLGNLHTKTKGHEICD--LIRHGGLQDFHYIPEKHICFVTFI 451


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 28/108 (25%), Positives = 49/108 (45%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FVG+L  E     L+E F   G+I   R++    T K KG+ FV F    D +  ++AM
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTCMKAM 286

Query: 674 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 817
               LG  S R  +   +  +K +   +P ++  +    + +  +  P
Sbjct: 287 E---LGHNSWRLEYGEDR--SKRMRNKSPMARSGRFNDAESLGQEDKP 329



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 230 LYVGNLDPSVTEVFLCTLFGQIGXVK 307
           L+VGNLD   T+  L   FGQ+G ++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIR 255


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 637
           +FVG+L  +     L+  F   G++ + RI  D  + + KGYAFV F+
Sbjct: 94  LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 661
           +FV ++SP + +  LR  F  FGE+ +  +  +P T  S G   +SF K++    A
Sbjct: 96  VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +2

Query: 479 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 658
           S    +F+ +L+     + L+  F PFG++    +  D +T   KG+A++ F    DA+ 
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADD 376

Query: 659 AIQA 670
           A++A
Sbjct: 377 AVRA 380



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 30/110 (27%), Positives = 46/110 (41%)
 Frame = +2

Query: 593 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKR 772
           P    S G+ FV F  KA A AA+ AMNG  L    +    S      +GV+  A   K+
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS-----HQGVDAAAEVRKQ 713

Query: 773 AKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRV 922
                     + S P  T +          T++ +Q+    +GQ++ +RV
Sbjct: 714 ----------DSSKPKGTKILIKNLPFE-ATKKDVQSLLGAYGQLRSVRV 752


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 476 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 655
           TS   ++++  L P      L      FG++S+ + + D +T   KGY F  F ++  A 
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351

Query: 656 AAIQAM 673
             I AM
Sbjct: 352 ICISAM 357


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 20/87 (22%), Positives = 43/87 (49%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           ++VG++   +    L+  FA  G ++   I+ D  T   KG+A++ F + +    A+  +
Sbjct: 57  VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115

Query: 674 NGQWLGSRSIRTNWSTRKPPAKGVNEG 754
           NG  L  R ++   + ++    G++ G
Sbjct: 116 NGSMLHERPLKV--TPKRTNVPGMSRG 140


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 5/186 (2%)
 Frame = +2

Query: 155  VFXAVKKVIDXLR*AXLGAASHPKT-LYVGNLDPSVTEVFLCTLFGQIGXVKGCKX--IR 325
            V  A  + +  +R   +    H  T LYV N  P+  E+ +  LF   G V   +   +R
Sbjct: 642  VLAAKTRDLKSIRGHEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLR 701

Query: 326  EPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQ-PKTDTSNH-HHIF 499
               N  + +++             ++K+++ +K     + + P  + P++        ++
Sbjct: 702  YNTNRRFCYVQMR-KPDEAHNALQLHKKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELY 760

Query: 500  VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 679
            V ++  ++    +   F  +G++ + RI +  +  + KG+ +V      DAE A+ A  G
Sbjct: 761  VTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAA-G 817

Query: 680  QWLGSR 697
            + LG+R
Sbjct: 818  KQLGNR 823


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 33.1 bits (72), Expect = 0.088
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS-KGYAFVSF 634
           I+VG LS  IE++ L   F+ FG +SN  I+     + + + +A+++F
Sbjct: 7   IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +F+ +LS +I    + + F  +G +   R +R   T++++G AFV +    DA  A + +
Sbjct: 14  LFIKNLSFKITAEEMYDLFGRYGPV---RQIRLGNTVQTRGTAFVVYENVQDARRACEKL 70

Query: 674 NG 679
           +G
Sbjct: 71  SG 72


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +FVG + P+     + + F  +G+I +C+++         G+ FV      DA   +   
Sbjct: 6   LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57

Query: 674 NG-QWLGSRSI 703
            G +++GSR +
Sbjct: 58  QGKEFMGSRIV 68


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 491 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 670
           ++ + +L+P   ++ +      FGEI NC+ V D Q    K  A V F   A A+  +Q 
Sbjct: 101 NVVIENLAPGTSSDDVAATLLNFGEILNCQ-VNDSQ---GKVRASVRFSTLASAQQVVQK 156

Query: 671 MNG 679
           ++G
Sbjct: 157 LDG 159


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +2

Query: 533 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 712
           IL   F  +G++ +   V+  +TL+ +G AFV F    +A  A++ + G  L  + +   
Sbjct: 45  ILEHLFGSYGKVID---VQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQ 101

Query: 713 WSTRK 727
           +S  K
Sbjct: 102 YSKSK 106


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           +F+G ++  +   +LR  F  FG + +  +  + +      + F+   ++  AE A  AM
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYR------HGFLKMFRRDAAEKAQVAM 461

Query: 674 NGQWLGSRSIRTNW 715
                   +IRT W
Sbjct: 462 ENVPFADTTIRTKW 475


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +2

Query: 494 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 673
           ++VG+LS       +   F+  GEI    +  D  T    G+ FV + +  DA  +++ +
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93

Query: 674 NGQWLGSRSIRTN 712
           +   L  R IR +
Sbjct: 94  SRTSLDERIIRAD 106


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 776 LLSYYWARL---HSHPSLVVYALTSSYVWILIPATGHSLPGWQL 654
           +L YY  RL    S  ++ V+++ ++   +L    GHS P WQL
Sbjct: 16  ILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQL 59


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 25/105 (23%), Positives = 42/105 (40%)
 Frame = +2

Query: 635 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 814
           V  + + A++   N     S     N STR           P+   A   T + +  Q  
Sbjct: 529 VSSSKSTASLNTNNNGLRASTPEMANISTRSSSESNNTNSWPTVGDA---TIENL-TQHE 584

Query: 815 PTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRXKGYAFI 949
           PT+  ++ G   S + +   +  TFS +G +  IR+   K  AF+
Sbjct: 585 PTHA-LWVGNLPSGV-SATTVATTFSAYGTVSSIRMLSHKHSAFL 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,251,321
Number of Sequences: 5004
Number of extensions: 84521
Number of successful extensions: 296
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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