Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E08
         (1355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.48 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.64 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -1

Query: 611 PPPPPXXXXXIXXPPXXPPG--GXXPPPP 531
           P PPP        PP  PPG  G  PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
 Frame = -1

Query: 611 PPPPPXXXXXIXXP---PXXPP----GGXXPPPP 531
           PPPPP        P   P  PP    GG  PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 632 PGIFXXXPPPPPXXXXXIXXPPXXPPGGXXPPPP 531
           P      PPPPP         P  PP    PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP----PPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 611 PPPPPXXXXXIXXPPXXPPGGXXPPPP 531
           PPPPP         P  P G   PPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 611 PPPPPXXXXXIXXPPXXPPGGXXPPPP 531
           PPPPP            PP G   PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 1259 PPXPXXXXXXGGPPXXXGEREXXQNPPPP 1173
            PP P      G PP   G       PPPP
Sbjct: 313  PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = -1

Query: 632  PGIFXXXPPPPPXXXXXIXXPPXXPPGGXXPPPP 531
            P +    PPPPP         P  P G    PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 611 PPPPPXXXXXIXXPPXXPPG 552
           PPPPP        PP  PPG
Sbjct: 12  PPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,875
Number of Sequences: 5004
Number of extensions: 26410
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)