Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E06
         (1257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    30   0.77 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    29   1.3  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    28   2.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   4.1  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    27   7.2  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +1

Query: 661  LQQNDKGKNGFKFATAFYSDSSPVKLQPAPRENGHVDKPLYSPITFEGCARQKSYDEVDN 840
            L  N    + F  +T    ++S  +LQ     + +V+K    P  F      +++DE++N
Sbjct: 1152 LGANSTNGSNFPASTTPSYENSNRRLQSVSDLSWYVNKTDSEPFRFGTMIAAETFDELEN 1211

Query: 841  ATSSTIPKTEFSAIPFHLSTTIDSDS 918
              +  I +   S   F+   T+D +S
Sbjct: 1212 NLALAIDRLPLSRNYFNAGLTLDGNS 1237


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 577 ERSPTEDQDLPFYDVDSDPEIKEQAKQLLQQNDKGKNGFKFATAFYSDSSPVKLQPAPRE 756
           E+S  +++DL   +V+   EI    K+L     + + GFK+   F ++    KL  A  +
Sbjct: 573 EKSKKKNEDLSKLEVEKVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDLQGKLIEANEK 632

Query: 757 N 759
           N
Sbjct: 633 N 633


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 700 ATAFYSDSSPVKLQPAPRENGHVDKPLYSPITFEGCARQKSYDEVDNATSSTIPKTEFSA 879
           A   +S+ +  ++    + + +  KP+    T+     Q + D V NA + T PKT F  
Sbjct: 267 ANNHHSEKAGTQINNKDKGSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTSPKTLFDP 326

Query: 880 I 882
           +
Sbjct: 327 L 327


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 607 VGPDLRWGIVQEKDGRIHQWD 545
           V PD RWG+   KD  +  WD
Sbjct: 546 VSPDSRWGLSGSKDRSMQFWD 566


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 23/99 (23%), Positives = 43/99 (43%)
 Frame = +1

Query: 373 ARHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPI 552
           A    T +RNLS   +   +S+ +   NA +NR  +SP +      +           P+
Sbjct: 4   AHKRDTNVRNLSAPYNIPSQSARVAAGNAAINRRRSSPVENSPGNGF-----------PV 52

Query: 553 DECDHPFPERSPTEDQDLPFYDVDSDPEIKEQAKQLLQQ 669
            E    +P  + +E++ LP     +   ++E A +L Q+
Sbjct: 53  SEDATDYPSGTTSENESLPLN--RAPRSLREVASELAQE 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,141,266
Number of Sequences: 5004
Number of extensions: 82948
Number of successful extensions: 229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)