Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E06
         (1257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    29   5.8  
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987...    29   7.7  

>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 553 DECDHPFPERSPTEDQDLPFYDVDSDPEIKEQAKQLLQQNDKGK 684
           D+ D  +      ++ D  F D  SD EIK   KQ  +  DKGK
Sbjct: 550 DDDDDGYSSEDGLDEHDDFFDDEMSDEEIKPNKKQKAKAKDKGK 593


>07_03_0408 -
           17798033-17798181,17798349-17798616,17798707-17798797,
           17800458-17800585,17800760-17800891
          Length = 255

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
 Frame = +1

Query: 616 DVDSDPEIKEQAKQLLQQNDKGKNGFKFA-TAFYSDSSPVKLQ-PAPRE--NGHVDKPLY 783
           D+++D E    A+  L +ND+ +NG + A TA    +   K   P P E     ++    
Sbjct: 103 DIETDAEQLLLARHQLVENDRIRNGNREALTALRKRAKTTKTSVPTPFEIIMKGLEGTSG 162

Query: 784 SPITFEGCARQKSYDEVDNATSSTIPKTE-FSAIPFHLS-TTIDSDSE 921
             +  E C     +D  ++ T    P ++ F+ +PFH++ T +D D E
Sbjct: 163 KQLVKEICPTCGDHDPKED-TWLMFPGSDIFARVPFHVAHTVLDKDQE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,624,785
Number of Sequences: 37544
Number of extensions: 585153
Number of successful extensions: 1655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3887643768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)