Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_E06
(1257 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 33 0.56
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 33 0.56
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 31 1.3
U53333-9|AAA96162.1| 117|Caenorhabditis elegans Hypothetical pr... 31 1.3
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 31 1.3
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 31 1.7
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 31 1.7
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 30 3.0
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 30 4.0
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 30 4.0
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 30 4.0
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 29 6.9
AL031633-26|CAA21013.2| 465|Caenorhabditis elegans Hypothetical... 29 9.2
AL031630-14|CAA20993.1| 185|Caenorhabditis elegans Hypothetical... 29 9.2
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 32.7 bits (71), Expect = 0.56
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 538 PCSPIDECDHPFPERSPTEDQDLPF-YDVDSDPEIKEQAKQLLQQNDKGKNGFKFATAFY 714
P +P+ C P P R+P+ P ++V++ I+E+ K+ L Q + K + A
Sbjct: 257 PVAPMPRCPPPLPPRTPSMKLPDPIAFEVEN--RIEEERKKNLIQREISVGSSKSSDALM 314
Query: 715 SDSSP-VKLQPAPRENGHVDKPL 780
+ ++P VK R++ +D+ L
Sbjct: 315 ASTTPDVKEVNGHRKSNSIDRGL 337
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 32.7 bits (71), Expect = 0.56
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 538 PCSPIDECDHPFPERSPTEDQDLPF-YDVDSDPEIKEQAKQLLQQNDKGKNGFKFATAFY 714
P +P+ C P P R+P+ P ++V++ I+E+ K+ L Q + K + A
Sbjct: 257 PVAPMPRCPPPLPPRTPSMKLPDPIAFEVEN--RIEEERKKNLIQREISVGSSKSSDALM 314
Query: 715 SDSSP-VKLQPAPRENGHVDKPL 780
+ ++P VK R++ +D+ L
Sbjct: 315 ASTTPDVKEVNGHRKSNSIDRGL 337
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 544 SPIDECDHPFPE--RSPTEDQDLP-FYDVDSDPEIKEQAKQLLQQNDKGKNGFKFAT 705
+P++ C+ F E SP +D D FY+ D D E++E+ +N KNG +F T
Sbjct: 5 APMNLCNEQFEEIEDSPIDDNDNESFYNADGDVELEEEEVHETPKN--FKNGGRFKT 59
>U53333-9|AAA96162.1| 117|Caenorhabditis elegans Hypothetical
protein F36A4.3 protein.
Length = 117
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 383 RWRAKATARPRQDIG-SIDVRPHGDPAR 303
+W K R Q +G ID RPHG P+R
Sbjct: 83 KWSKKVNGRVGQSVGFDIDARPHGKPSR 110
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 544 SPIDECDHPFPE--RSPTEDQDLP-FYDVDSDPEIKEQAKQLLQQNDKGKNGFKFAT 705
+P++ C+ F E SP +D D FY+ D D E++E+ +N KNG +F T
Sbjct: 5 APMNLCNEQFEEIEDSPIDDNDNESFYNADGDVELEEEEVHETPKN--FKNGGRFKT 59
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 568 PFPERSPTEDQDLPFYDVDSDPEIK---EQAKQLLQQ 669
PF R+ T D D P+ D DS PE+ ++ +Q ++Q
Sbjct: 3 PFKRRALTSDDDRPYADTDSMPEVDLDVDRRRQYMEQ 39
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 568 PFPERSPTEDQDLPFYDVDSDPEIK---EQAKQLLQQ 669
PF R+ T D D P+ D DS PE+ ++ +Q ++Q
Sbjct: 3 PFKRRALTSDDDRPYADTDSMPEVDLDVDRRRQYMEQ 39
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 353 EGVPSPSRATYKHGY---VT*AEHRTKTVRAAGLPEKTLNSTDHQPPRDNATTT 505
E VP P + TY GY T + T T A P + S+ +P ++A TT
Sbjct: 488 EDVPEPLKITYSEGYQPSQTDDKESTSTNSDAAAPPQKSTSSSPKPVEESAATT 541
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 353 EGVPSPSRATYKHGY---VT*AEHRTKTVRAAGLPEKTLNSTDHQPPRDNATTT 505
E VP P + TY GY T + T T A P + S+ +P ++A TT
Sbjct: 1551 EDVPEPLKITYSEGYQPSQTDDKESTSTNSDAAAPPQKSTSSSPKPVEESAATT 1604
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1751 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1810
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1811 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1840
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1791 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1850
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1851 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1880
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1852 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1911
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1912 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1941
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1751 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1810
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1811 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1840
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1791 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1850
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1851 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1880
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1852 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1911
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1912 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1941
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 29.9 bits (64), Expect = 4.0
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 376 RHLQTRLRNLSGTQDEDCESSWLTRENAQLNRPPTSPGQRDHDTFYDFELECESPCSPID 555
RH + R+RN E ES+ + + P RD ++E + I
Sbjct: 1791 RHPERRIRNNRSNSSEHDESAVDSEGGGNVTSSPRKRSTRDLRMTPSSQVEESTSRDQIF 1850
Query: 556 ECDHPFPERSPTEDQDLPFYDVDSDPEIKEQ 648
E DHP E + D DV ++ E +E+
Sbjct: 1851 EIDHPEHEEDEAQ-ADCELTDVITEEEDEEE 1880
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 29.1 bits (62), Expect = 6.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Frame = +1
Query: 481 SPGQRDHDTFYDFELECESPCS-----PIDECD-HPFPERSPTEDQDL 606
SP ++ H +Y C S CS P E D P + S TE DL
Sbjct: 55 SPSRQSHSDYYSVASSCSSSCSDDDVIPFFEQDLRPLVDASSTESDDL 102
>AL031633-26|CAA21013.2| 465|Caenorhabditis elegans Hypothetical
protein Y39A1A.9 protein.
Length = 465
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 466 NRPPTSPGQRDHDTFYDFELECESPCSPIDECDHPFPERSPTEDQDLPFYD 618
++P TSP D ++ L C++P SPID+ + + T D + +++
Sbjct: 54 SQPQTSPSSGLDD--HEHRLLCDTPSSPIDQASYFNNNNNKTSDLNTSWFN 102
>AL031630-14|CAA20993.1| 185|Caenorhabditis elegans Hypothetical
protein Y38H6C.15 protein.
Length = 185
Score = 28.7 bits (61), Expect = 9.2
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 589 TEDQDLPFYDVDSDPEIKEQAKQLLQQNDKGKNGFKFATAFYSDSSPVKLQPAPRENGHV 768
T+D ++P D PE K+ A++L +++DK K T S+ P K + E
Sbjct: 68 TQDPNMPPNKEDKKPESKKSAEKLSKKSDKTKK----KTTVSSEDKPEKPEKLTEEEKPK 123
Query: 769 DK 774
+K
Sbjct: 124 EK 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,266,757
Number of Sequences: 27780
Number of extensions: 493456
Number of successful extensions: 1381
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -