Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E06
         (1257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.79 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 742 PAPRENGHV--DKPLYSPITFEGCARQK-SYDEVDNATSSTIPKTEFSAI 882
           P P E+  +  ++ +YSPITF+  AR+  +     NA S         A+
Sbjct: 660 PTPAESTFIPEERRIYSPITFQDVARRSVANSPTKNADSREYRSNSMGAV 709


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +2

Query: 605 YLSTMSIRIQK*KNKRNSYCNRTIKGRTDLNSLQPFTQIARP*NFSQPHEK 757
           YL+ +   + + +N+R +  +R  +   D   LQP      P    +P E+
Sbjct: 434 YLNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSFGEPLGLRRPQER 484


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 478 TSPGQRDHDTFYDFELECESPCSPIDE 558
           T PG+ + DT  D E    S  +P+D+
Sbjct: 129 TDPGEHNGDTVTDVEAGLASRTNPLDD 155


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 478 TSPGQRDHDTFYDFELECESPCSPIDE 558
           T PG+ + DT  D E    S  +P+D+
Sbjct: 124 TDPGEHNGDTVTDVEAGLASRTNPLDD 150


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 344  CLAEGVPSPSRATYKHGYVT*AEHRTKTVRAAGLPEKTLNSTD 472
            CLA GVP+P       G V  +  R + +    L  K ++ TD
Sbjct: 1298 CLAVGVPAPEVTWKVRGAVLQSSDRLRQLPEGSLFIKEVDRTD 1340


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 138 ETLLSGTRSGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGARASRP 275
           +TL SGTRS     +    R        CD  P   + +G+R   P
Sbjct: 51  DTLYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 279 HEDGKPVLQGHLQARGTHHINTQPA 205
           H+    ++ GH Q+    HIN+ P+
Sbjct: 796 HQHAAQMIYGHQQSHHGLHINSSPS 820


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 204 VLVGYLCDEFPWLGDVLG 257
           V V YL  E+PW   VLG
Sbjct: 515 VPVKYLTYEYPWWSHVLG 532


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 204 VLVGYLCDEFPWLGDVLG 257
           V V YL  E+PW   VLG
Sbjct: 568 VPVKYLTYEYPWWSHVLG 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,870
Number of Sequences: 438
Number of extensions: 6054
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42982554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)