Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E05
         (1362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0505 + 24991699-24991921,24992100-24992665                       33   0.69 
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    31   2.1  
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    31   2.1  
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983...    31   2.8  
06_01_0512 - 3695109-3695523,3696318-3696868                           29   6.4  

>03_05_0505 + 24991699-24991921,24992100-24992665
          Length = 262

 Score = 32.7 bits (71), Expect = 0.69
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 293 CASATRLGRCCAGRTPPA 240
           CAS+T + RCCAG  PPA
Sbjct: 48  CASSTTVARCCAGPRPPA 65


>08_02_1382 +
           26565137-26565210,26565330-26565468,26565489-26565603,
           26565761-26565828,26565907-26566551,26566927-26567031,
           26567115-26567465
          Length = 498

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 30/110 (27%), Positives = 45/110 (40%)
 Frame = +1

Query: 580 DEAGSLARYLGIFSSHGVNLSHIESRSSTRRPGYEFMVECEHGSGDFGAALEELKKNVGY 759
           D  G L+    IF  HG++++H E  +   R    F V    G      A+E ++  +G 
Sbjct: 392 DRVGLLSDVTRIFREHGLSVTHAEVATRGARAANVFYVVAASGEPVEAHAVEAVRAEIGE 451

Query: 760 LNIISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAELDSDHPGIYRSC 909
             +  R  +D     P  P   RD     N I S  +E    + G+ RSC
Sbjct: 452 QVLFVR--EDAGGGEPRSPPG-RDRRSLGNMIRS-RSEKFLYNLGLIRSC 497


>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +1

Query: 688 MVECEHGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPW 810
           +V+CE   G++G+ L ELKK + +LN ++   + NR ++ W
Sbjct: 243 LVKCEQWGGNYGSKLNELKK-MWFLNRVAG--QRNRGSMDW 280


>03_02_0610 +
           9834083-9834368,9834495-9834556,9834695-9834787,
           9835689-9835805,9835972-9836055,9836198-9836293,
           9836368-9836445,9836548-9836637,9836733-9836800,
           9836940-9837021,9838203-9838289
          Length = 380

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 589 GSLARYLGIFSSHGVNLSHIESRSSTRRP 675
           G L + LG+F+   +NL+ IESR   +RP
Sbjct: 284 GQLFKALGVFALREINLTKIESRPHKKRP 312


>06_01_0512 - 3695109-3695523,3696318-3696868
          Length = 321

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 360 HCGHLRTDLHENF----VGQVLTLTNVLWSQSLVVTNESDPSVRDGSFAKID 503
           HCGH+  +LHE F    +GQV+ L   L +   +V +  + S  + S  ++D
Sbjct: 40  HCGHIVMELHEWFPWKTIGQVIGLYMKLNAGKPMVMHSLNKSDANNSIGEVD 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,080,539
Number of Sequences: 37544
Number of extensions: 769005
Number of successful extensions: 2082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4295031588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)