Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E03
         (1293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   5.6  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   9.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   9.8  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    26   9.8  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 84  NAGDRTINHQQRQQ-LPFTRVSLGRALRRCLQR*LSFCSR 200
           +AG + I  +Q  Q L F   ++GR  R+ LQR L+F  R
Sbjct: 218 SAGFKEIAEKQESQGLCFVSPNVGRKFRKFLQRYLNFSDR 257


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 121 CRCWWLIVRSP 89
           C CWWLI+ +P
Sbjct: 278 CSCWWLILSTP 288


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 760 IVSINTYSIAVCDIILCKEKI 822
           ++ +N  S+++CD ++  EKI
Sbjct: 612 LIDLNEISVSICDFVVASEKI 632


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 756 KHCVYKYLFYSSL*HY 803
           KHC +KYL YS L  Y
Sbjct: 258 KHCSFKYLIYSQLIAY 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,223
Number of Sequences: 5004
Number of extensions: 55910
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)