Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E03
         (1293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1172 - 35115248-35115874                                         27   7.5  
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309...    29   8.0  

>01_06_1172 - 35115248-35115874
          Length = 208

 Score = 26.6 bits (56), Expect(2) = 7.5
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -2

Query: 302 YTHLPASPLTG----LEHSLSDLGGSDELTSF--NVIVLLAA 195
           Y   PASP  G     +H+LS  GG     SF  N++++LAA
Sbjct: 11  YMGTPASPSPGSAGEAQHALSSGGGGGSDASFDTNMVIILAA 52



 Score = 21.0 bits (42), Expect(2) = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 416 YTAMLSWGQQTPANPA 369
           +T  +SW   TPA+P+
Sbjct: 4   HTKSMSWYMGTPASPS 19


>04_03_0681 +
           18628107-18629346,18630476-18630486,18630836-18630943,
           18631158-18631250
          Length = 483

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -1

Query: 429 NTNLLHCNAVLGTANSSEPSDVTVVRFVGVDGDVPSGLTACEIHAPARVAA 277
           +T   H NA    A SS+   + V  FV  D   P  LT C +H PA + A
Sbjct: 25  HTGRCHDNATTARAKSSDGYPIEV-SFVFAD---PPALTRCFVHCPAGLTA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,966,857
Number of Sequences: 37544
Number of extensions: 390545
Number of successful extensions: 1061
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)