Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_E03
         (1293 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U31351-1|AAB97618.1|  810|Drosophila melanogaster protein ( Dros...    33   0.64 
AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adapti...    33   0.64 
AE014297-3138|AAF55983.2| 1469|Drosophila melanogaster CG31169-P...    31   4.5  

>U31351-1|AAB97618.1|  810|Drosophila melanogaster protein (
           Drosophila melanogastergarnet mRNA, complete cds. ).
          Length = 810

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +3

Query: 411 SVVNLYYYIPYSVCYRVCCHLNFQLITVHGHVRLQIM*LCNCTLFLIH 554
           + + +Y YI Y  CYR CCH   QL+     V +Q + L  C L LIH
Sbjct: 114 TTIYIYIYICYRYCYRCCCHC--QLL--FAIVVVQCLSLYRC-LLLIH 156


>AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adaptin
           subunit of AP-3 protein.
          Length = 810

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +3

Query: 411 SVVNLYYYIPYSVCYRVCCHLNFQLITVHGHVRLQIM*LCNCTLFLIH 554
           + + +Y YI Y  CYR CCH   QL+     V +Q + L  C L LIH
Sbjct: 114 TTIYIYIYICYRYCYRCCCHC--QLL--FAIVVVQCLSLYRC-LLLIH 156


>AE014297-3138|AAF55983.2| 1469|Drosophila melanogaster CG31169-PA,
           isoform A protein.
          Length = 1469

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 76  WSTTPVIEQSTTSNGSNYHLQEYPWAEPYVDVSSDSLVFVAANN 207
           W+T+ V +++T+ NG N   +     E +++    SL+ +  NN
Sbjct: 2   WNTSNVYDETTSENGDNEEQKASYIKEDHIETERKSLLLIKRNN 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,001,012
Number of Sequences: 53049
Number of extensions: 661081
Number of successful extensions: 2415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2404
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6987975015
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)